Hb_001946_150

Information

Type -
Description -
Location Contig1946: 180799-181794
Sequence    

Annotation

kegg
ID rcu:RCOM_0223720
description hypothetical protein
nr
ID XP_002524493.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SES4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0223720 PE=4 SV=1
Gene Ontology
ID GO:0005576
description plat domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19395: 177059-179979 , PASA_asmbl_19396: 177119-179979
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002903_130 0.1312102429 - - epoxide hydrolase, putative [Ricinus communis]
3 Hb_000362_110 0.1377701089 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
4 Hb_000313_370 0.1413813058 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_000866_090 0.1478422455 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
6 Hb_000645_240 0.1484040536 - - AMP dependent ligase, putative [Ricinus communis]
7 Hb_001799_190 0.1560615011 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
8 Hb_006717_070 0.1570130492 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
9 Hb_003517_020 0.1588815884 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]
10 Hb_020178_060 0.161602609 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
11 Hb_000395_220 0.1634424964 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
12 Hb_009732_020 0.1654778157 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
13 Hb_000022_180 0.1665626618 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
14 Hb_007125_040 0.1666479002 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
15 Hb_003849_240 0.1671024495 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
16 Hb_001322_180 0.1682463511 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
17 Hb_148682_010 0.1713241477 - - PREDICTED: uncharacterized protein LOC105630720 [Jatropha curcas]
18 Hb_127886_010 0.1737330616 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
19 Hb_001195_020 0.1739032162 - - PREDICTED: ornithine carbamoyltransferase, chloroplastic [Jatropha curcas]
20 Hb_012565_080 0.1764606479 - - serine/threonine kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001946_150 Hb_001946_150 Hb_002903_130 Hb_002903_130 Hb_001946_150--Hb_002903_130 Hb_000362_110 Hb_000362_110 Hb_001946_150--Hb_000362_110 Hb_000313_370 Hb_000313_370 Hb_001946_150--Hb_000313_370 Hb_000866_090 Hb_000866_090 Hb_001946_150--Hb_000866_090 Hb_000645_240 Hb_000645_240 Hb_001946_150--Hb_000645_240 Hb_001799_190 Hb_001799_190 Hb_001946_150--Hb_001799_190 Hb_000977_010 Hb_000977_010 Hb_002903_130--Hb_000977_010 Hb_020178_060 Hb_020178_060 Hb_002903_130--Hb_020178_060 Hb_003640_030 Hb_003640_030 Hb_002903_130--Hb_003640_030 Hb_000097_040 Hb_000097_040 Hb_002903_130--Hb_000097_040 Hb_002903_130--Hb_000362_110 Hb_006717_070 Hb_006717_070 Hb_000362_110--Hb_006717_070 Hb_000395_220 Hb_000395_220 Hb_000362_110--Hb_000395_220 Hb_001780_150 Hb_001780_150 Hb_000362_110--Hb_001780_150 Hb_000362_110--Hb_001799_190 Hb_007426_140 Hb_007426_140 Hb_000362_110--Hb_007426_140 Hb_000362_110--Hb_000977_010 Hb_000313_370--Hb_000977_010 Hb_003517_020 Hb_003517_020 Hb_000313_370--Hb_003517_020 Hb_003576_050 Hb_003576_050 Hb_000313_370--Hb_003576_050 Hb_002030_170 Hb_002030_170 Hb_000313_370--Hb_002030_170 Hb_000313_370--Hb_000362_110 Hb_000866_090--Hb_000645_240 Hb_001080_140 Hb_001080_140 Hb_000866_090--Hb_001080_140 Hb_002471_140 Hb_002471_140 Hb_000866_090--Hb_002471_140 Hb_008667_060 Hb_008667_060 Hb_000866_090--Hb_008667_060 Hb_000802_190 Hb_000802_190 Hb_000866_090--Hb_000802_190 Hb_001699_150 Hb_001699_150 Hb_000866_090--Hb_001699_150 Hb_000022_180 Hb_000022_180 Hb_000645_240--Hb_000022_180 Hb_004976_040 Hb_004976_040 Hb_000645_240--Hb_004976_040 Hb_000866_370 Hb_000866_370 Hb_000645_240--Hb_000866_370 Hb_000081_120 Hb_000081_120 Hb_000645_240--Hb_000081_120 Hb_000345_340 Hb_000345_340 Hb_000645_240--Hb_000345_340 Hb_001799_190--Hb_001699_150 Hb_001414_040 Hb_001414_040 Hb_001799_190--Hb_001414_040 Hb_001675_010 Hb_001675_010 Hb_001799_190--Hb_001675_010 Hb_001799_190--Hb_000395_220 Hb_001322_180 Hb_001322_180 Hb_001799_190--Hb_001322_180 Hb_002524_020 Hb_002524_020 Hb_001799_190--Hb_002524_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.715 13.7308 4.40524 3.06606 5.04605 3.09736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.75483 1.70793 1.75349 21.9392 3.23854

CAGE analysis