Hb_003640_030

Information

Type -
Description -
Location Contig3640: 18090-20703
Sequence    

Annotation

kegg
ID cit:102618019
description uncharacterized LOC102618019
nr
ID XP_012088775.1
description PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23138 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37469: 14700-19235 , PASA_asmbl_37470: 19401-20733
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003640_030 0.0 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
2 Hb_002903_130 0.1329604705 - - epoxide hydrolase, putative [Ricinus communis]
3 Hb_000362_110 0.157839304 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
4 Hb_020178_060 0.1645472966 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
5 Hb_000283_150 0.1649354996 - - Ankyrin repeat family protein [Theobroma cacao]
6 Hb_000977_010 0.1658346404 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
7 Hb_000061_380 0.1697348828 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007785_010 0.1773741083 - - glutathione peroxidase, putative [Ricinus communis]
9 Hb_001351_040 0.1775392303 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
10 Hb_000130_060 0.1838460458 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
11 Hb_001946_150 0.1914444944 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000406_060 0.1933936147 - - hypothetical protein CICLE_v10000115mg [Citrus clementina]
13 Hb_007380_040 0.1968738457 - - receptor-kinase, putative [Ricinus communis]
14 Hb_000640_130 0.2029436582 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
15 Hb_048848_010 0.2055048576 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
16 Hb_001416_020 0.2077553243 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
17 Hb_007426_140 0.2080454455 - - ornithine aminotransferase, putative [Ricinus communis]
18 Hb_010398_010 0.2088895217 - - PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 15a-like [Malus domestica]
19 Hb_002827_020 0.2092286781 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
20 Hb_000315_030 0.2119989868 - - carbohydrate binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003640_030 Hb_003640_030 Hb_002903_130 Hb_002903_130 Hb_003640_030--Hb_002903_130 Hb_000362_110 Hb_000362_110 Hb_003640_030--Hb_000362_110 Hb_020178_060 Hb_020178_060 Hb_003640_030--Hb_020178_060 Hb_000283_150 Hb_000283_150 Hb_003640_030--Hb_000283_150 Hb_000977_010 Hb_000977_010 Hb_003640_030--Hb_000977_010 Hb_000061_380 Hb_000061_380 Hb_003640_030--Hb_000061_380 Hb_002903_130--Hb_000977_010 Hb_002903_130--Hb_020178_060 Hb_001946_150 Hb_001946_150 Hb_002903_130--Hb_001946_150 Hb_000097_040 Hb_000097_040 Hb_002903_130--Hb_000097_040 Hb_002903_130--Hb_000362_110 Hb_006717_070 Hb_006717_070 Hb_000362_110--Hb_006717_070 Hb_000395_220 Hb_000395_220 Hb_000362_110--Hb_000395_220 Hb_001780_150 Hb_001780_150 Hb_000362_110--Hb_001780_150 Hb_001799_190 Hb_001799_190 Hb_000362_110--Hb_001799_190 Hb_007426_140 Hb_007426_140 Hb_000362_110--Hb_007426_140 Hb_000362_110--Hb_000977_010 Hb_020178_060--Hb_000283_150 Hb_008948_160 Hb_008948_160 Hb_020178_060--Hb_008948_160 Hb_012565_080 Hb_012565_080 Hb_020178_060--Hb_012565_080 Hb_000538_190 Hb_000538_190 Hb_020178_060--Hb_000538_190 Hb_000521_170 Hb_000521_170 Hb_020178_060--Hb_000521_170 Hb_001416_020 Hb_001416_020 Hb_000283_150--Hb_001416_020 Hb_000640_130 Hb_000640_130 Hb_000283_150--Hb_000640_130 Hb_002827_020 Hb_002827_020 Hb_000283_150--Hb_002827_020 Hb_000283_150--Hb_000521_170 Hb_000036_050 Hb_000036_050 Hb_000283_150--Hb_000036_050 Hb_000313_370 Hb_000313_370 Hb_000977_010--Hb_000313_370 Hb_001351_040 Hb_001351_040 Hb_000977_010--Hb_001351_040 Hb_000189_120 Hb_000189_120 Hb_000977_010--Hb_000189_120 Hb_001584_010 Hb_001584_010 Hb_000977_010--Hb_001584_010 Hb_000061_380--Hb_002903_130 Hb_000061_380--Hb_000283_150 Hb_048848_010 Hb_048848_010 Hb_000061_380--Hb_048848_010 Hb_000315_030 Hb_000315_030 Hb_000061_380--Hb_000315_030 Hb_000061_380--Hb_020178_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.998868 4.02614 0.942182 1.70143 2.8182 2.4319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.153358 0.261432 0.26609 6.512 0.38116

CAGE analysis