Hb_001416_020

Information

Type -
Description -
Location Contig1416: 11491-19503
Sequence    

Annotation

kegg
ID rcu:RCOM_0854050
description H(\+)-transporting atpase plant/fungi plasma membrane type, putative (EC:3.6.3.6)
nr
ID XP_002517457.1
description H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
swissprot
ID Q9SU58
description ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=AHA4 PE=2 SV=2
trembl
ID B9RUL2
description H(\+)-transporting atpase plant/fungi plasma membrane type, putative OS=Ricinus communis GN=RCOM_0854050 PE=4 SV=1
Gene Ontology
ID GO:0016021
description h(\+)-transporting atpase plant fungi plasma membrane

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11174: 11552-19228 , PASA_asmbl_11175: 15992-16430
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001416_020 0.0 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
2 Hb_000640_130 0.0992537801 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
3 Hb_000521_170 0.1067680214 - - PREDICTED: callose synthase 1 [Jatropha curcas]
4 Hb_000283_150 0.1072150874 - - Ankyrin repeat family protein [Theobroma cacao]
5 Hb_001575_010 0.1113256589 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_005143_030 0.1124363372 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
7 Hb_011716_090 0.1127344705 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
8 Hb_000200_280 0.1130030851 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
9 Hb_000976_040 0.1170000854 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
10 Hb_002827_020 0.1181211104 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
11 Hb_000032_310 0.127721977 - - ring finger protein, putative [Ricinus communis]
12 Hb_001514_130 0.1317615093 - - hypothetical protein JCGZ_16073 [Jatropha curcas]
13 Hb_011828_030 0.1334581375 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
14 Hb_028487_010 0.1351383222 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
15 Hb_156850_070 0.1358927179 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002005_090 0.1362081395 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000684_290 0.1373865021 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
18 Hb_011512_090 0.1375838049 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
19 Hb_089140_030 0.1394972153 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
20 Hb_000069_410 0.1396171825 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001416_020 Hb_001416_020 Hb_000640_130 Hb_000640_130 Hb_001416_020--Hb_000640_130 Hb_000521_170 Hb_000521_170 Hb_001416_020--Hb_000521_170 Hb_000283_150 Hb_000283_150 Hb_001416_020--Hb_000283_150 Hb_001575_010 Hb_001575_010 Hb_001416_020--Hb_001575_010 Hb_005143_030 Hb_005143_030 Hb_001416_020--Hb_005143_030 Hb_011716_090 Hb_011716_090 Hb_001416_020--Hb_011716_090 Hb_000215_100 Hb_000215_100 Hb_000640_130--Hb_000215_100 Hb_000976_040 Hb_000976_040 Hb_000640_130--Hb_000976_040 Hb_002005_090 Hb_002005_090 Hb_000640_130--Hb_002005_090 Hb_000640_130--Hb_011716_090 Hb_000640_130--Hb_000521_170 Hb_000032_310 Hb_000032_310 Hb_000521_170--Hb_000032_310 Hb_000932_070 Hb_000932_070 Hb_000521_170--Hb_000932_070 Hb_011828_030 Hb_011828_030 Hb_000521_170--Hb_011828_030 Hb_011671_230 Hb_011671_230 Hb_000521_170--Hb_011671_230 Hb_000283_150--Hb_000640_130 Hb_002827_020 Hb_002827_020 Hb_000283_150--Hb_002827_020 Hb_000283_150--Hb_000521_170 Hb_000036_050 Hb_000036_050 Hb_000283_150--Hb_000036_050 Hb_020178_060 Hb_020178_060 Hb_000283_150--Hb_020178_060 Hb_000069_410 Hb_000069_410 Hb_001575_010--Hb_000069_410 Hb_001575_010--Hb_005143_030 Hb_001821_090 Hb_001821_090 Hb_001575_010--Hb_001821_090 Hb_028487_010 Hb_028487_010 Hb_001575_010--Hb_028487_010 Hb_002170_050 Hb_002170_050 Hb_001575_010--Hb_002170_050 Hb_011173_030 Hb_011173_030 Hb_001575_010--Hb_011173_030 Hb_005143_030--Hb_028487_010 Hb_002107_070 Hb_002107_070 Hb_005143_030--Hb_002107_070 Hb_000369_130 Hb_000369_130 Hb_005143_030--Hb_000369_130 Hb_005143_030--Hb_001821_090 Hb_003498_120 Hb_003498_120 Hb_005143_030--Hb_003498_120 Hb_089140_030 Hb_089140_030 Hb_011716_090--Hb_089140_030 Hb_000200_280 Hb_000200_280 Hb_011716_090--Hb_000200_280 Hb_002693_060 Hb_002693_060 Hb_011716_090--Hb_002693_060 Hb_011716_090--Hb_002827_020 Hb_003211_010 Hb_003211_010 Hb_011716_090--Hb_003211_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.1492 98.1122 11.3226 36.5835 76.6561 68.6774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.5604 27.4474 14.3012 107.531 29.6338

CAGE analysis