Hb_000032_310

Information

Type -
Description -
Location Contig32: 265648-267783
Sequence    

Annotation

kegg
ID rcu:RCOM_1692030
description ring finger protein, putative
nr
ID XP_002509961.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID P0CH01
description Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV=1
trembl
ID B9RCS7
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_1692030 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring-h2 finger protein atl21b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_310 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_000521_170 0.0607875414 - - PREDICTED: callose synthase 1 [Jatropha curcas]
3 Hb_006185_020 0.0900645093 - - PREDICTED: midasin [Jatropha curcas]
4 Hb_000808_070 0.118615822 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
5 Hb_003157_010 0.121322262 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
6 Hb_144824_010 0.1257909565 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
7 Hb_001989_020 0.1267550186 - - hypothetical protein JCGZ_15521 [Jatropha curcas]
8 Hb_009028_030 0.1272932744 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
9 Hb_001416_020 0.127721977 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
10 Hb_000932_070 0.1334302432 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
11 Hb_057451_010 0.1362991912 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
12 Hb_002762_130 0.1369812304 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
13 Hb_002609_090 0.1395116701 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_000236_080 0.1430686131 - - PREDICTED: small subunit processome component 20 homolog [Jatropha curcas]
15 Hb_001301_230 0.1434137664 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
16 Hb_000264_100 0.1434225772 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000832_320 0.1446557371 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
18 Hb_164010_070 0.1449535853 - - Paramyosin, putative [Ricinus communis]
19 Hb_009848_030 0.145036636 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
20 Hb_001396_260 0.1453219391 - - PREDICTED: F-box only protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000032_310 Hb_000032_310 Hb_000521_170 Hb_000521_170 Hb_000032_310--Hb_000521_170 Hb_006185_020 Hb_006185_020 Hb_000032_310--Hb_006185_020 Hb_000808_070 Hb_000808_070 Hb_000032_310--Hb_000808_070 Hb_003157_010 Hb_003157_010 Hb_000032_310--Hb_003157_010 Hb_144824_010 Hb_144824_010 Hb_000032_310--Hb_144824_010 Hb_001989_020 Hb_001989_020 Hb_000032_310--Hb_001989_020 Hb_000640_130 Hb_000640_130 Hb_000521_170--Hb_000640_130 Hb_001416_020 Hb_001416_020 Hb_000521_170--Hb_001416_020 Hb_000932_070 Hb_000932_070 Hb_000521_170--Hb_000932_070 Hb_011828_030 Hb_011828_030 Hb_000521_170--Hb_011828_030 Hb_011671_230 Hb_011671_230 Hb_000521_170--Hb_011671_230 Hb_000181_180 Hb_000181_180 Hb_006185_020--Hb_000181_180 Hb_003206_030 Hb_003206_030 Hb_006185_020--Hb_003206_030 Hb_006185_020--Hb_144824_010 Hb_000236_080 Hb_000236_080 Hb_006185_020--Hb_000236_080 Hb_006185_020--Hb_000808_070 Hb_001301_230 Hb_001301_230 Hb_000808_070--Hb_001301_230 Hb_000808_070--Hb_003157_010 Hb_006501_020 Hb_006501_020 Hb_000808_070--Hb_006501_020 Hb_018133_030 Hb_018133_030 Hb_000808_070--Hb_018133_030 Hb_007257_050 Hb_007257_050 Hb_000808_070--Hb_007257_050 Hb_000808_070--Hb_000932_070 Hb_057451_010 Hb_057451_010 Hb_003157_010--Hb_057451_010 Hb_003157_010--Hb_006501_020 Hb_009028_030 Hb_009028_030 Hb_003157_010--Hb_009028_030 Hb_000640_200 Hb_000640_200 Hb_003157_010--Hb_000640_200 Hb_003157_010--Hb_001989_020 Hb_000832_320 Hb_000832_320 Hb_144824_010--Hb_000832_320 Hb_000340_110 Hb_000340_110 Hb_144824_010--Hb_000340_110 Hb_001511_110 Hb_001511_110 Hb_144824_010--Hb_001511_110 Hb_005946_170 Hb_005946_170 Hb_144824_010--Hb_005946_170 Hb_029223_050 Hb_029223_050 Hb_144824_010--Hb_029223_050 Hb_164010_070 Hb_164010_070 Hb_144824_010--Hb_164010_070 Hb_000649_010 Hb_000649_010 Hb_001989_020--Hb_000649_010 Hb_000023_060 Hb_000023_060 Hb_001989_020--Hb_000023_060 Hb_001396_260 Hb_001396_260 Hb_001989_020--Hb_001396_260 Hb_007101_180 Hb_007101_180 Hb_001989_020--Hb_007101_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.12511 4.66414 0.34794 0.834801 2.52081 2.7334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.535418 0.589679 0.525066 2.54865 0.935056

CAGE analysis