Hb_000181_180

Information

Type -
Description -
Location Contig181: 133486-147440
Sequence    

Annotation

kegg
ID rcu:RCOM_0201120
description hypothetical protein
nr
ID XP_012076513.1
description PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
swissprot
ID O60287
description Nucleolar pre-ribosomal-associated protein 1 OS=Homo sapiens GN=URB1 PE=1 SV=4
trembl
ID B9T4B4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0201120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17505: 133611-140290 , PASA_asmbl_17506: 141077-142427 , PASA_asmbl_17507: 144850-145558
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_180 0.0 - - PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
2 Hb_003206_030 0.0809868632 - - PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas]
3 Hb_000136_090 0.0865337173 - - programmed cell death protein, putative [Ricinus communis]
4 Hb_012180_050 0.0922986388 - - PREDICTED: uncharacterized protein LOC105632355 isoform X3 [Jatropha curcas]
5 Hb_000236_080 0.0928943229 - - PREDICTED: small subunit processome component 20 homolog [Jatropha curcas]
6 Hb_001080_270 0.0965937478 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
7 Hb_001028_070 0.0974941054 - - PREDICTED: WD repeat-containing protein 75 isoform X2 [Jatropha curcas]
8 Hb_000959_040 0.0993226609 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
9 Hb_006185_020 0.0995769685 - - PREDICTED: midasin [Jatropha curcas]
10 Hb_000107_040 0.1000460593 - - nuclear pore complex protein nup153, putative [Ricinus communis]
11 Hb_004970_150 0.1007626566 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]
12 Hb_030565_090 0.1022760016 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
13 Hb_000997_030 0.1051859003 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
14 Hb_000421_120 0.1053839958 - - PREDICTED: NEDD8-specific protease 1 [Jatropha curcas]
15 Hb_002477_150 0.1056025696 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
16 Hb_000363_130 0.1058845003 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
17 Hb_002813_010 0.1059443599 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
18 Hb_000865_080 0.1087963837 - - arsenite-resistance protein, putative [Ricinus communis]
19 Hb_029142_010 0.1096274955 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
20 Hb_000239_070 0.1097907437 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000181_180 Hb_000181_180 Hb_003206_030 Hb_003206_030 Hb_000181_180--Hb_003206_030 Hb_000136_090 Hb_000136_090 Hb_000181_180--Hb_000136_090 Hb_012180_050 Hb_012180_050 Hb_000181_180--Hb_012180_050 Hb_000236_080 Hb_000236_080 Hb_000181_180--Hb_000236_080 Hb_001080_270 Hb_001080_270 Hb_000181_180--Hb_001080_270 Hb_001028_070 Hb_001028_070 Hb_000181_180--Hb_001028_070 Hb_000421_120 Hb_000421_120 Hb_003206_030--Hb_000421_120 Hb_002813_010 Hb_002813_010 Hb_003206_030--Hb_002813_010 Hb_030565_090 Hb_030565_090 Hb_003206_030--Hb_030565_090 Hb_002477_150 Hb_002477_150 Hb_003206_030--Hb_002477_150 Hb_000865_080 Hb_000865_080 Hb_003206_030--Hb_000865_080 Hb_000136_090--Hb_012180_050 Hb_000363_130 Hb_000363_130 Hb_000136_090--Hb_000363_130 Hb_000136_090--Hb_001028_070 Hb_000300_360 Hb_000300_360 Hb_000136_090--Hb_000300_360 Hb_006252_020 Hb_006252_020 Hb_000136_090--Hb_006252_020 Hb_000120_610 Hb_000120_610 Hb_000136_090--Hb_000120_610 Hb_063716_080 Hb_063716_080 Hb_012180_050--Hb_063716_080 Hb_002960_160 Hb_002960_160 Hb_012180_050--Hb_002960_160 Hb_000158_130 Hb_000158_130 Hb_012180_050--Hb_000158_130 Hb_000098_130 Hb_000098_130 Hb_012180_050--Hb_000098_130 Hb_000796_190 Hb_000796_190 Hb_012180_050--Hb_000796_190 Hb_000023_060 Hb_000023_060 Hb_000236_080--Hb_000023_060 Hb_000107_040 Hb_000107_040 Hb_000236_080--Hb_000107_040 Hb_001900_110 Hb_001900_110 Hb_000236_080--Hb_001900_110 Hb_000997_030 Hb_000997_030 Hb_000236_080--Hb_000997_030 Hb_003623_030 Hb_003623_030 Hb_000236_080--Hb_003623_030 Hb_000227_380 Hb_000227_380 Hb_001080_270--Hb_000227_380 Hb_004718_010 Hb_004718_010 Hb_001080_270--Hb_004718_010 Hb_002411_120 Hb_002411_120 Hb_001080_270--Hb_002411_120 Hb_001080_270--Hb_000997_030 Hb_000959_040 Hb_000959_040 Hb_001080_270--Hb_000959_040 Hb_000813_100 Hb_000813_100 Hb_001080_270--Hb_000813_100 Hb_001221_150 Hb_001221_150 Hb_001028_070--Hb_001221_150 Hb_000567_010 Hb_000567_010 Hb_001028_070--Hb_000567_010 Hb_004970_160 Hb_004970_160 Hb_001028_070--Hb_004970_160 Hb_001028_070--Hb_000120_610 Hb_001417_050 Hb_001417_050 Hb_001028_070--Hb_001417_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.23988 7.46511 1.48627 1.48036 6.38053 8.19047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.29802 3.42407 1.42458 3.81059 2.33824

CAGE analysis