Hb_000236_080

Information

Type -
Description -
Location Contig236: 71962-93814
Sequence    

Annotation

kegg
ID pop:POPTR_0001s32620g
description hypothetical protein
nr
ID XP_012071266.1
description PREDICTED: small subunit processome component 20 homolog [Jatropha curcas]
swissprot
ID O75691
description Small subunit processome component 20 homolog OS=Homo sapiens GN=UTP20 PE=1 SV=3
trembl
ID A0A067KT76
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01094 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24654: 72439-73970 , PASA_asmbl_24655: 74431-75105 , PASA_asmbl_24658: 81465-87577 , PASA_asmbl_24659: 87939-88718 , PASA_asmbl_24660: 90549-91278
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_080 0.0 - - PREDICTED: small subunit processome component 20 homolog [Jatropha curcas]
2 Hb_000023_060 0.0822828205 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
3 Hb_000107_040 0.0844006962 - - nuclear pore complex protein nup153, putative [Ricinus communis]
4 Hb_000181_180 0.0928943229 - - PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
5 Hb_001900_110 0.0933219411 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
6 Hb_000997_030 0.0977035998 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
7 Hb_003623_030 0.0985177858 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
8 Hb_029142_010 0.1015799727 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
9 Hb_000227_380 0.1091569167 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
10 Hb_006185_020 0.1118098493 - - PREDICTED: midasin [Jatropha curcas]
11 Hb_002762_130 0.1129578571 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
12 Hb_000959_040 0.1144009529 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
13 Hb_002471_210 0.1167459281 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
14 Hb_141547_010 0.1173889332 - - PREDICTED: ARF guanine-nucleotide exchange factor GNOM [Jatropha curcas]
15 Hb_000264_100 0.1188453301 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001028_070 0.1190683046 - - PREDICTED: WD repeat-containing protein 75 isoform X2 [Jatropha curcas]
17 Hb_000158_100 0.1210643782 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003866_020 0.1212499393 - - conserved hypothetical protein [Ricinus communis]
19 Hb_030565_090 0.1221618097 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
20 Hb_007904_180 0.1223503617 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_000236_080 Hb_000236_080 Hb_000023_060 Hb_000023_060 Hb_000236_080--Hb_000023_060 Hb_000107_040 Hb_000107_040 Hb_000236_080--Hb_000107_040 Hb_000181_180 Hb_000181_180 Hb_000236_080--Hb_000181_180 Hb_001900_110 Hb_001900_110 Hb_000236_080--Hb_001900_110 Hb_000997_030 Hb_000997_030 Hb_000236_080--Hb_000997_030 Hb_003623_030 Hb_003623_030 Hb_000236_080--Hb_003623_030 Hb_000023_060--Hb_000997_030 Hb_029142_010 Hb_029142_010 Hb_000023_060--Hb_029142_010 Hb_007849_020 Hb_007849_020 Hb_000023_060--Hb_007849_020 Hb_000023_060--Hb_000107_040 Hb_000227_380 Hb_000227_380 Hb_000023_060--Hb_000227_380 Hb_042487_010 Hb_042487_010 Hb_000023_060--Hb_042487_010 Hb_000107_040--Hb_000997_030 Hb_000107_040--Hb_029142_010 Hb_000107_040--Hb_003623_030 Hb_030565_090 Hb_030565_090 Hb_000107_040--Hb_030565_090 Hb_000264_100 Hb_000264_100 Hb_000107_040--Hb_000264_100 Hb_003206_030 Hb_003206_030 Hb_000181_180--Hb_003206_030 Hb_000136_090 Hb_000136_090 Hb_000181_180--Hb_000136_090 Hb_012180_050 Hb_012180_050 Hb_000181_180--Hb_012180_050 Hb_001080_270 Hb_001080_270 Hb_000181_180--Hb_001080_270 Hb_001028_070 Hb_001028_070 Hb_000181_180--Hb_001028_070 Hb_141547_010 Hb_141547_010 Hb_001900_110--Hb_141547_010 Hb_000158_100 Hb_000158_100 Hb_001900_110--Hb_000158_100 Hb_001900_110--Hb_029142_010 Hb_001900_110--Hb_000997_030 Hb_001900_110--Hb_000023_060 Hb_000997_030--Hb_000264_100 Hb_000997_030--Hb_030565_090 Hb_000813_100 Hb_000813_100 Hb_000997_030--Hb_000813_100 Hb_034243_020 Hb_034243_020 Hb_000997_030--Hb_034243_020 Hb_002551_070 Hb_002551_070 Hb_003623_030--Hb_002551_070 Hb_002028_170 Hb_002028_170 Hb_003623_030--Hb_002028_170 Hb_003623_030--Hb_000158_100 Hb_116929_010 Hb_116929_010 Hb_003623_030--Hb_116929_010 Hb_032631_040 Hb_032631_040 Hb_003623_030--Hb_032631_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.00149 11.2124 1.3997 1.68375 8.52779 15.1323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.01362 3.40838 3.37674 7.74169 4.016

CAGE analysis