Hb_012180_050

Information

Type -
Description -
Location Contig12180: 46612-83639
Sequence    

Annotation

kegg
ID rcu:RCOM_0702910
description RNA binding protein, putative
nr
ID XP_012070109.1
description PREDICTED: uncharacterized protein LOC105632355 isoform X3 [Jatropha curcas]
swissprot
ID Q13395
description Probable methyltransferase TARBP1 OS=Homo sapiens GN=TARBP1 PE=1 SV=1
trembl
ID A0A067L633
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03491 PE=4 SV=1
Gene Ontology
ID GO:0003723
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06623: 64059-73102 , PASA_asmbl_06624: 74476-80446 , PASA_asmbl_06625: 81912-83253
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012180_050 0.0 - - PREDICTED: uncharacterized protein LOC105632355 isoform X3 [Jatropha curcas]
2 Hb_000136_090 0.0655654462 - - programmed cell death protein, putative [Ricinus communis]
3 Hb_063716_080 0.0753930557 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
4 Hb_002960_160 0.0782309645 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
5 Hb_000158_130 0.081262178 - - PREDICTED: uncharacterized protein LOC105647950 isoform X1 [Jatropha curcas]
6 Hb_000098_130 0.0860891459 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
7 Hb_000796_190 0.0884993818 - - hypothetical protein F383_31148 [Gossypium arboreum]
8 Hb_000181_180 0.0922986388 - - PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
9 Hb_003124_130 0.0956971807 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
10 Hb_003299_070 0.0958522181 - - AMP deaminase [Theobroma cacao]
11 Hb_003935_030 0.0964848889 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
12 Hb_000300_360 0.096823685 - - PREDICTED: exosome component 10 [Jatropha curcas]
13 Hb_185679_010 0.0991798109 - - serine/threonine-protein kinase rio2, putative [Ricinus communis]
14 Hb_004899_070 0.0993959928 - - PREDICTED: RRP12-like protein [Jatropha curcas]
15 Hb_011386_040 0.0995161621 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
16 Hb_000120_610 0.1007229446 - - mitotic control protein dis3, putative [Ricinus communis]
17 Hb_005494_020 0.1016087062 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
18 Hb_000567_010 0.1016358915 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
19 Hb_005260_010 0.1019318974 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
20 Hb_000264_030 0.1034653927 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_012180_050 Hb_012180_050 Hb_000136_090 Hb_000136_090 Hb_012180_050--Hb_000136_090 Hb_063716_080 Hb_063716_080 Hb_012180_050--Hb_063716_080 Hb_002960_160 Hb_002960_160 Hb_012180_050--Hb_002960_160 Hb_000158_130 Hb_000158_130 Hb_012180_050--Hb_000158_130 Hb_000098_130 Hb_000098_130 Hb_012180_050--Hb_000098_130 Hb_000796_190 Hb_000796_190 Hb_012180_050--Hb_000796_190 Hb_000363_130 Hb_000363_130 Hb_000136_090--Hb_000363_130 Hb_001028_070 Hb_001028_070 Hb_000136_090--Hb_001028_070 Hb_000300_360 Hb_000300_360 Hb_000136_090--Hb_000300_360 Hb_006252_020 Hb_006252_020 Hb_000136_090--Hb_006252_020 Hb_000120_610 Hb_000120_610 Hb_000136_090--Hb_000120_610 Hb_003641_060 Hb_003641_060 Hb_063716_080--Hb_003641_060 Hb_063716_080--Hb_002960_160 Hb_002255_030 Hb_002255_030 Hb_063716_080--Hb_002255_030 Hb_080313_010 Hb_080313_010 Hb_063716_080--Hb_080313_010 Hb_003935_030 Hb_003935_030 Hb_063716_080--Hb_003935_030 Hb_005494_020 Hb_005494_020 Hb_002960_160--Hb_005494_020 Hb_000567_010 Hb_000567_010 Hb_002960_160--Hb_000567_010 Hb_002960_160--Hb_000796_190 Hb_000743_040 Hb_000743_040 Hb_002960_160--Hb_000743_040 Hb_002044_060 Hb_002044_060 Hb_002960_160--Hb_002044_060 Hb_003124_130 Hb_003124_130 Hb_000158_130--Hb_003124_130 Hb_000158_130--Hb_000136_090 Hb_000375_130 Hb_000375_130 Hb_000158_130--Hb_000375_130 Hb_000158_130--Hb_000098_130 Hb_001454_320 Hb_001454_320 Hb_000158_130--Hb_001454_320 Hb_000261_290 Hb_000261_290 Hb_000098_130--Hb_000261_290 Hb_004899_070 Hb_004899_070 Hb_000098_130--Hb_004899_070 Hb_000120_620 Hb_000120_620 Hb_000098_130--Hb_000120_620 Hb_003097_180 Hb_003097_180 Hb_000098_130--Hb_003097_180 Hb_000098_130--Hb_000363_130 Hb_000098_130--Hb_000300_360 Hb_007558_120 Hb_007558_120 Hb_000796_190--Hb_007558_120 Hb_000796_190--Hb_003124_130 Hb_000329_130 Hb_000329_130 Hb_000796_190--Hb_000329_130 Hb_002174_020 Hb_002174_020 Hb_000796_190--Hb_002174_020 Hb_000796_190--Hb_000300_360 Hb_000796_190--Hb_001454_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.54043 7.18524 2.78516 2.97884 6.24046 8.27018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.25471 3.2418 1.1965 3.87992 1.94163

CAGE analysis