Hb_057451_010

Information

Type -
Description -
Location Contig57451: 9085-11007
Sequence    

Annotation

kegg
ID rcu:RCOM_1642670
description hypothetical protein
nr
ID XP_012074056.1
description PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KN21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08667 PE=4 SV=1
Gene Ontology
ID GO:0005886
description fch domain only protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 011_B18.ab1: 9331-10073

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_057451_010 0.0 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
2 Hb_009028_030 0.0648394793 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
3 Hb_000640_200 0.0688213119 - - hypothetical protein RCOM_1346600 [Ricinus communis]
4 Hb_003157_010 0.0727072798 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
5 Hb_003710_040 0.0894404846 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
6 Hb_004899_070 0.0897674315 - - PREDICTED: RRP12-like protein [Jatropha curcas]
7 Hb_000313_340 0.0947598913 - - DNA repair protein xp-E, putative [Ricinus communis]
8 Hb_010584_010 0.0950441637 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
9 Hb_001221_160 0.096306009 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
10 Hb_006501_020 0.1003925961 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
11 Hb_015763_020 0.1020800073 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
12 Hb_015475_020 0.1032682323 - - importin beta-1, putative [Ricinus communis]
13 Hb_001080_270 0.1041083095 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
14 Hb_000261_290 0.1041247927 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
15 Hb_000264_100 0.1073591353 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001522_010 0.1082014404 - - PREDICTED: nucleolar protein 14 isoform X1 [Jatropha curcas]
17 Hb_004970_160 0.1105102262 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
18 Hb_018133_030 0.1116650125 - - Heme-binding protein, putative [Ricinus communis]
19 Hb_000813_100 0.1136538678 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
20 Hb_000589_040 0.1136937045 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]

Gene co-expression network

sample Hb_057451_010 Hb_057451_010 Hb_009028_030 Hb_009028_030 Hb_057451_010--Hb_009028_030 Hb_000640_200 Hb_000640_200 Hb_057451_010--Hb_000640_200 Hb_003157_010 Hb_003157_010 Hb_057451_010--Hb_003157_010 Hb_003710_040 Hb_003710_040 Hb_057451_010--Hb_003710_040 Hb_004899_070 Hb_004899_070 Hb_057451_010--Hb_004899_070 Hb_000313_340 Hb_000313_340 Hb_057451_010--Hb_000313_340 Hb_009028_030--Hb_003710_040 Hb_000265_250 Hb_000265_250 Hb_009028_030--Hb_000265_250 Hb_009028_030--Hb_003157_010 Hb_009028_030--Hb_004899_070 Hb_011465_030 Hb_011465_030 Hb_009028_030--Hb_011465_030 Hb_000640_200--Hb_004899_070 Hb_006501_020 Hb_006501_020 Hb_000640_200--Hb_006501_020 Hb_006588_050 Hb_006588_050 Hb_000640_200--Hb_006588_050 Hb_000813_100 Hb_000813_100 Hb_000640_200--Hb_000813_100 Hb_031069_020 Hb_031069_020 Hb_000640_200--Hb_031069_020 Hb_003157_010--Hb_006501_020 Hb_000808_070 Hb_000808_070 Hb_003157_010--Hb_000808_070 Hb_003157_010--Hb_000640_200 Hb_001989_020 Hb_001989_020 Hb_003157_010--Hb_001989_020 Hb_001221_160 Hb_001221_160 Hb_003710_040--Hb_001221_160 Hb_003710_040--Hb_004899_070 Hb_003710_040--Hb_000640_200 Hb_000261_290 Hb_000261_290 Hb_003710_040--Hb_000261_290 Hb_000098_130 Hb_000098_130 Hb_004899_070--Hb_000098_130 Hb_004899_070--Hb_000261_290 Hb_000120_620 Hb_000120_620 Hb_004899_070--Hb_000120_620 Hb_004970_160 Hb_004970_160 Hb_004899_070--Hb_004970_160 Hb_004899_070--Hb_000813_100 Hb_140049_020 Hb_140049_020 Hb_000313_340--Hb_140049_020 Hb_001946_300 Hb_001946_300 Hb_000313_340--Hb_001946_300 Hb_007885_070 Hb_007885_070 Hb_000313_340--Hb_007885_070 Hb_000313_340--Hb_004899_070 Hb_000313_340--Hb_000261_290 Hb_000363_130 Hb_000363_130 Hb_000313_340--Hb_000363_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
150.668 187.781 32.4925 49.3982 207.581 170.603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.3708 22.6302 43.3595 85.8374 43.1099

CAGE analysis