Hb_001989_020

Information

Type -
Description -
Location Contig1989: 75612-81758
Sequence    

Annotation

kegg
ID rcu:RCOM_0756330
description hypothetical protein
nr
ID KDP30909.1
description hypothetical protein JCGZ_15521 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KGE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15521 PE=4 SV=1
Gene Ontology
ID GO:0009987
description hypothetical protein JCGZ_15521

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19942: 76479-81760 , PASA_asmbl_19943: 75656-78037 , PASA_asmbl_19944: 80598-80710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001989_020 0.0 - - hypothetical protein JCGZ_15521 [Jatropha curcas]
2 Hb_003157_010 0.1103100255 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
3 Hb_000032_310 0.1267550186 - - ring finger protein, putative [Ricinus communis]
4 Hb_000649_010 0.132169286 - - PREDICTED: adagio protein 3 [Jatropha curcas]
5 Hb_000023_060 0.1329126943 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
6 Hb_001396_260 0.1329566567 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
7 Hb_007101_180 0.1340533449 - - PREDICTED: DNA polymerase beta [Jatropha curcas]
8 Hb_007307_030 0.1374043994 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
9 Hb_000521_170 0.1391347911 - - PREDICTED: callose synthase 1 [Jatropha curcas]
10 Hb_000264_100 0.1402292725 - - conserved hypothetical protein [Ricinus communis]
11 Hb_015763_020 0.1406031848 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
12 Hb_164010_070 0.1417559744 - - Paramyosin, putative [Ricinus communis]
13 Hb_000236_080 0.146340161 - - PREDICTED: small subunit processome component 20 homolog [Jatropha curcas]
14 Hb_000808_070 0.1470704211 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
15 Hb_000932_070 0.1479955502 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
16 Hb_009848_030 0.1483336417 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
17 Hb_000740_110 0.1486637489 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01850 [Jatropha curcas]
18 Hb_141547_010 0.1487669497 - - PREDICTED: ARF guanine-nucleotide exchange factor GNOM [Jatropha curcas]
19 Hb_001900_110 0.1493900499 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
20 Hb_000976_040 0.1526877087 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001989_020 Hb_001989_020 Hb_003157_010 Hb_003157_010 Hb_001989_020--Hb_003157_010 Hb_000032_310 Hb_000032_310 Hb_001989_020--Hb_000032_310 Hb_000649_010 Hb_000649_010 Hb_001989_020--Hb_000649_010 Hb_000023_060 Hb_000023_060 Hb_001989_020--Hb_000023_060 Hb_001396_260 Hb_001396_260 Hb_001989_020--Hb_001396_260 Hb_007101_180 Hb_007101_180 Hb_001989_020--Hb_007101_180 Hb_057451_010 Hb_057451_010 Hb_003157_010--Hb_057451_010 Hb_006501_020 Hb_006501_020 Hb_003157_010--Hb_006501_020 Hb_000808_070 Hb_000808_070 Hb_003157_010--Hb_000808_070 Hb_009028_030 Hb_009028_030 Hb_003157_010--Hb_009028_030 Hb_000640_200 Hb_000640_200 Hb_003157_010--Hb_000640_200 Hb_000521_170 Hb_000521_170 Hb_000032_310--Hb_000521_170 Hb_006185_020 Hb_006185_020 Hb_000032_310--Hb_006185_020 Hb_000032_310--Hb_000808_070 Hb_000032_310--Hb_003157_010 Hb_144824_010 Hb_144824_010 Hb_000032_310--Hb_144824_010 Hb_001301_230 Hb_001301_230 Hb_000649_010--Hb_001301_230 Hb_000649_010--Hb_000808_070 Hb_000932_070 Hb_000932_070 Hb_000649_010--Hb_000932_070 Hb_000649_010--Hb_003157_010 Hb_004032_180 Hb_004032_180 Hb_000649_010--Hb_004032_180 Hb_000997_030 Hb_000997_030 Hb_000023_060--Hb_000997_030 Hb_029142_010 Hb_029142_010 Hb_000023_060--Hb_029142_010 Hb_007849_020 Hb_007849_020 Hb_000023_060--Hb_007849_020 Hb_000107_040 Hb_000107_040 Hb_000023_060--Hb_000107_040 Hb_000227_380 Hb_000227_380 Hb_000023_060--Hb_000227_380 Hb_042487_010 Hb_042487_010 Hb_000023_060--Hb_042487_010 Hb_084429_010 Hb_084429_010 Hb_001396_260--Hb_084429_010 Hb_015763_020 Hb_015763_020 Hb_001396_260--Hb_015763_020 Hb_004096_080 Hb_004096_080 Hb_001396_260--Hb_004096_080 Hb_031089_030 Hb_031089_030 Hb_001396_260--Hb_031089_030 Hb_001396_260--Hb_003157_010 Hb_001396_260--Hb_009028_030 Hb_010080_060 Hb_010080_060 Hb_007101_180--Hb_010080_060 Hb_007101_180--Hb_000227_380 Hb_000589_040 Hb_000589_040 Hb_007101_180--Hb_000589_040 Hb_000342_090 Hb_000342_090 Hb_007101_180--Hb_000342_090 Hb_000264_100 Hb_000264_100 Hb_007101_180--Hb_000264_100 Hb_126643_010 Hb_126643_010 Hb_007101_180--Hb_126643_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
95.9913 129.716 15.1897 19.734 80.2596 108.624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0066 12.0521 38.8284 110.529 15.422

CAGE analysis