Hb_000589_040

Information

Type desease resistance
Description Gene Name: zf-BED
Location Contig589: 22250-26452
Sequence    

Annotation

kegg
ID pop:POPTR_0019s01100g
description hypothetical protein
nr
ID XP_012070653.1
description PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
swissprot
ID O81825
description Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1
trembl
ID A0A067KS33
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00699 PE=4 SV=1
Gene Ontology
ID GO:0003677
description probable disease resistance protein at4g27220 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50063: 22133-22709 , PASA_asmbl_50064: 23353-23759 , PASA_asmbl_50065: 25366-26123
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_040 0.0 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
2 Hb_111985_080 0.0898524275 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
3 Hb_000023_060 0.0947707554 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
4 Hb_002301_080 0.0963151703 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
5 Hb_000088_130 0.0971117524 - - hypothetical protein JCGZ_02447 [Jatropha curcas]
6 Hb_002400_240 0.09721922 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
7 Hb_005143_030 0.09824782 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
8 Hb_001080_270 0.0985295951 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
9 Hb_000375_130 0.1009304819 - - Leucine-rich repeat transmembrane protein kinase family protein isoform 1 [Theobroma cacao]
10 Hb_116929_010 0.1020452087 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
11 Hb_000264_100 0.1021458362 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004195_060 0.1023403433 - - PREDICTED: uncharacterized protein LOC105803780 isoform X1 [Gossypium raimondii]
13 Hb_000997_030 0.103003435 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
14 Hb_030627_060 0.1047337166 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
15 Hb_007101_180 0.1067067184 - - PREDICTED: DNA polymerase beta [Jatropha curcas]
16 Hb_001366_210 0.1094471408 - - cathepsin B, putative [Ricinus communis]
17 Hb_004718_010 0.1098087802 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
18 Hb_133047_010 0.1100839693 - - xanthine dehydrogenase, putative [Ricinus communis]
19 Hb_156850_070 0.1106356526 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004970_160 0.1129179191 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000589_040 Hb_000589_040 Hb_111985_080 Hb_111985_080 Hb_000589_040--Hb_111985_080 Hb_000023_060 Hb_000023_060 Hb_000589_040--Hb_000023_060 Hb_002301_080 Hb_002301_080 Hb_000589_040--Hb_002301_080 Hb_000088_130 Hb_000088_130 Hb_000589_040--Hb_000088_130 Hb_002400_240 Hb_002400_240 Hb_000589_040--Hb_002400_240 Hb_005143_030 Hb_005143_030 Hb_000589_040--Hb_005143_030 Hb_133047_010 Hb_133047_010 Hb_111985_080--Hb_133047_010 Hb_148909_030 Hb_148909_030 Hb_111985_080--Hb_148909_030 Hb_111985_080--Hb_002301_080 Hb_030627_060 Hb_030627_060 Hb_111985_080--Hb_030627_060 Hb_004718_010 Hb_004718_010 Hb_111985_080--Hb_004718_010 Hb_064903_010 Hb_064903_010 Hb_111985_080--Hb_064903_010 Hb_000997_030 Hb_000997_030 Hb_000023_060--Hb_000997_030 Hb_029142_010 Hb_029142_010 Hb_000023_060--Hb_029142_010 Hb_007849_020 Hb_007849_020 Hb_000023_060--Hb_007849_020 Hb_000107_040 Hb_000107_040 Hb_000023_060--Hb_000107_040 Hb_000227_380 Hb_000227_380 Hb_000023_060--Hb_000227_380 Hb_042487_010 Hb_042487_010 Hb_000023_060--Hb_042487_010 Hb_116929_010 Hb_116929_010 Hb_002301_080--Hb_116929_010 Hb_003044_020 Hb_003044_020 Hb_002301_080--Hb_003044_020 Hb_117552_010 Hb_117552_010 Hb_002301_080--Hb_117552_010 Hb_002301_080--Hb_133047_010 Hb_002301_080--Hb_002400_240 Hb_000320_200 Hb_000320_200 Hb_002301_080--Hb_000320_200 Hb_004627_060 Hb_004627_060 Hb_000088_130--Hb_004627_060 Hb_000375_130 Hb_000375_130 Hb_000088_130--Hb_000375_130 Hb_174821_010 Hb_174821_010 Hb_000088_130--Hb_174821_010 Hb_002107_070 Hb_002107_070 Hb_000088_130--Hb_002107_070 Hb_001454_280 Hb_001454_280 Hb_000088_130--Hb_001454_280 Hb_000088_130--Hb_002301_080 Hb_001913_060 Hb_001913_060 Hb_002400_240--Hb_001913_060 Hb_002400_240--Hb_116929_010 Hb_002400_240--Hb_030627_060 Hb_002400_240--Hb_117552_010 Hb_005701_070 Hb_005701_070 Hb_002400_240--Hb_005701_070 Hb_001575_010 Hb_001575_010 Hb_005143_030--Hb_001575_010 Hb_028487_010 Hb_028487_010 Hb_005143_030--Hb_028487_010 Hb_005143_030--Hb_002107_070 Hb_000369_130 Hb_000369_130 Hb_005143_030--Hb_000369_130 Hb_001821_090 Hb_001821_090 Hb_005143_030--Hb_001821_090 Hb_003498_120 Hb_003498_120 Hb_005143_030--Hb_003498_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.67274 7.4069 1.14785 3.85619 9.71517 7.76305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.0433 1.84221 3.32383 6.75515 3.29821

CAGE analysis