Hb_000342_090

Information

Type -
Description -
Location Contig342: 109732-113407
Sequence    

Annotation

kegg
ID rcu:RCOM_1657030
description serine hydroxymethyltransferase, putative (EC:2.1.2.1)
nr
ID XP_012077319.1
description PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]
swissprot
ID Q94JQ3
description Serine hydroxymethyltransferase 3, chloroplastic OS=Arabidopsis thaliana GN=SHM3 PE=1 SV=2
trembl
ID A0A067KPA8
description Serine hydroxymethyltransferase OS=Jatropha curcas GN=JCGZ_07691 PE=3 SV=1
Gene Ontology
ID GO:0004372
description serine hydroxymethyltransferase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35740: 110058-113790 , PASA_asmbl_35741: 109837-113790 , PASA_asmbl_35742: 109812-111907
cDNA
(Sanger)
(ID:Location)		 005_H01.ab1: 112404-113790

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000342_090 0.0 - - PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]
2 Hb_007849_020 0.080107049 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
3 Hb_125092_020 0.085281082 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
4 Hb_000227_380 0.08778236 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
5 Hb_000023_060 0.0902784732 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
6 Hb_000417_160 0.0934081545 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
7 Hb_006816_300 0.0960925541 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
8 Hb_147737_010 0.0977466569 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
9 Hb_010080_060 0.0983074854 - - receptor protein kinase, putative [Ricinus communis]
10 Hb_175338_020 0.0986636352 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
11 Hb_140049_020 0.0997108602 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
12 Hb_000331_190 0.0997617585 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
13 Hb_000357_080 0.0998464998 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic [Jatropha curcas]
14 Hb_002105_080 0.0999523533 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
15 Hb_000088_130 0.1015838109 - - hypothetical protein JCGZ_02447 [Jatropha curcas]
16 Hb_000313_340 0.1018628215 - - DNA repair protein xp-E, putative [Ricinus communis]
17 Hb_004970_160 0.1018906092 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
18 Hb_006588_050 0.1019957815 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
19 Hb_000264_100 0.1030614517 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000531_090 0.1043601852 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]

Gene co-expression network

sample Hb_000342_090 Hb_000342_090 Hb_007849_020 Hb_007849_020 Hb_000342_090--Hb_007849_020 Hb_125092_020 Hb_125092_020 Hb_000342_090--Hb_125092_020 Hb_000227_380 Hb_000227_380 Hb_000342_090--Hb_000227_380 Hb_000023_060 Hb_000023_060 Hb_000342_090--Hb_000023_060 Hb_000417_160 Hb_000417_160 Hb_000342_090--Hb_000417_160 Hb_006816_300 Hb_006816_300 Hb_000342_090--Hb_006816_300 Hb_007849_020--Hb_006816_300 Hb_002471_210 Hb_002471_210 Hb_007849_020--Hb_002471_210 Hb_000250_070 Hb_000250_070 Hb_007849_020--Hb_000250_070 Hb_007849_020--Hb_000227_380 Hb_002105_080 Hb_002105_080 Hb_007849_020--Hb_002105_080 Hb_002291_070 Hb_002291_070 Hb_007849_020--Hb_002291_070 Hb_000531_090 Hb_000531_090 Hb_125092_020--Hb_000531_090 Hb_000331_190 Hb_000331_190 Hb_125092_020--Hb_000331_190 Hb_002652_040 Hb_002652_040 Hb_125092_020--Hb_002652_040 Hb_000035_040 Hb_000035_040 Hb_125092_020--Hb_000035_040 Hb_024990_010 Hb_024990_010 Hb_125092_020--Hb_024990_010 Hb_000567_010 Hb_000567_010 Hb_125092_020--Hb_000567_010 Hb_003866_020 Hb_003866_020 Hb_000227_380--Hb_003866_020 Hb_175338_020 Hb_175338_020 Hb_000227_380--Hb_175338_020 Hb_000239_070 Hb_000239_070 Hb_000227_380--Hb_000239_070 Hb_000002_440 Hb_000002_440 Hb_000227_380--Hb_000002_440 Hb_001080_270 Hb_001080_270 Hb_000227_380--Hb_001080_270 Hb_000997_030 Hb_000997_030 Hb_000023_060--Hb_000997_030 Hb_029142_010 Hb_029142_010 Hb_000023_060--Hb_029142_010 Hb_000023_060--Hb_007849_020 Hb_000107_040 Hb_000107_040 Hb_000023_060--Hb_000107_040 Hb_000023_060--Hb_000227_380 Hb_042487_010 Hb_042487_010 Hb_000023_060--Hb_042487_010 Hb_007885_070 Hb_007885_070 Hb_000417_160--Hb_007885_070 Hb_019153_020 Hb_019153_020 Hb_000417_160--Hb_019153_020 Hb_000510_310 Hb_000510_310 Hb_000417_160--Hb_000510_310 Hb_147737_010 Hb_147737_010 Hb_000417_160--Hb_147737_010 Hb_002221_050 Hb_002221_050 Hb_000417_160--Hb_002221_050 Hb_000329_130 Hb_000329_130 Hb_000417_160--Hb_000329_130 Hb_006816_300--Hb_002105_080 Hb_003018_160 Hb_003018_160 Hb_006816_300--Hb_003018_160 Hb_000046_450 Hb_000046_450 Hb_006816_300--Hb_000046_450 Hb_006816_300--Hb_000227_380 Hb_006816_300--Hb_000250_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
91.4282 53.5361 24.3852 17.3438 82.2307 92.7954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.5627 14.6241 39.8636 61.8827 22.0772

CAGE analysis