Hb_084429_010

Information

Type -
Description -
Location Contig84429: 7466-9046
Sequence    

Annotation

kegg
ID pop:POPTR_0017s06050g
description hypothetical protein
nr
ID XP_011026388.1
description PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]
swissprot
ID Q8W468
description Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana GN=ARI8 PE=2 SV=1
trembl
ID U5FKD8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s06050g PE=4 SV=1
Gene Ontology
ID GO:0004842
description probable e3 ubiquitin-protein ligase ari8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_084429_010 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]
2 Hb_001396_260 0.0953868636 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
3 Hb_004096_080 0.1170239866 - - PREDICTED: IST1 homolog [Jatropha curcas]
4 Hb_031089_030 0.117175815 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
5 Hb_007257_050 0.1258827559 - - protein with unknown function [Ricinus communis]
6 Hb_000375_370 0.1398757048 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
7 Hb_002849_080 0.1406148029 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
8 Hb_164010_070 0.1408060117 - - Paramyosin, putative [Ricinus communis]
9 Hb_006316_070 0.1427189186 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
10 Hb_002002_030 0.1434616959 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
11 Hb_009028_030 0.1454799464 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
12 Hb_001638_040 0.1455751533 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
13 Hb_015763_020 0.1458683212 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
14 Hb_010831_020 0.1472723267 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
15 Hb_003349_010 0.1532608833 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
16 Hb_000853_030 0.1544111811 - - sucrose synthase 2 [Hevea brasiliensis]
17 Hb_002078_420 0.1546614667 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
18 Hb_001989_020 0.1572577619 - - hypothetical protein JCGZ_15521 [Jatropha curcas]
19 Hb_000808_070 0.1576042874 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
20 Hb_026437_010 0.1578691063 - - -

Gene co-expression network

sample Hb_084429_010 Hb_084429_010 Hb_001396_260 Hb_001396_260 Hb_084429_010--Hb_001396_260 Hb_004096_080 Hb_004096_080 Hb_084429_010--Hb_004096_080 Hb_031089_030 Hb_031089_030 Hb_084429_010--Hb_031089_030 Hb_007257_050 Hb_007257_050 Hb_084429_010--Hb_007257_050 Hb_000375_370 Hb_000375_370 Hb_084429_010--Hb_000375_370 Hb_002849_080 Hb_002849_080 Hb_084429_010--Hb_002849_080 Hb_015763_020 Hb_015763_020 Hb_001396_260--Hb_015763_020 Hb_001396_260--Hb_004096_080 Hb_001396_260--Hb_031089_030 Hb_003157_010 Hb_003157_010 Hb_001396_260--Hb_003157_010 Hb_009028_030 Hb_009028_030 Hb_001396_260--Hb_009028_030 Hb_004096_080--Hb_015763_020 Hb_002078_420 Hb_002078_420 Hb_004096_080--Hb_002078_420 Hb_114310_040 Hb_114310_040 Hb_004096_080--Hb_114310_040 Hb_011861_070 Hb_011861_070 Hb_004096_080--Hb_011861_070 Hb_031089_030--Hb_007257_050 Hb_003299_080 Hb_003299_080 Hb_031089_030--Hb_003299_080 Hb_031089_030--Hb_000375_370 Hb_001247_140 Hb_001247_140 Hb_031089_030--Hb_001247_140 Hb_010584_010 Hb_010584_010 Hb_007257_050--Hb_010584_010 Hb_007257_050--Hb_009028_030 Hb_000265_250 Hb_000265_250 Hb_007257_050--Hb_000265_250 Hb_003349_010 Hb_003349_010 Hb_007257_050--Hb_003349_010 Hb_007257_050--Hb_003157_010 Hb_005122_060 Hb_005122_060 Hb_000375_370--Hb_005122_060 Hb_000375_370--Hb_001247_140 Hb_006816_410 Hb_006816_410 Hb_000375_370--Hb_006816_410 Hb_006501_020 Hb_006501_020 Hb_000375_370--Hb_006501_020 Hb_000365_060 Hb_000365_060 Hb_000375_370--Hb_000365_060 Hb_148209_020 Hb_148209_020 Hb_002849_080--Hb_148209_020 Hb_006316_070 Hb_006316_070 Hb_002849_080--Hb_006316_070 Hb_002977_010 Hb_002977_010 Hb_002849_080--Hb_002977_010 Hb_002609_010 Hb_002609_010 Hb_002849_080--Hb_002609_010 Hb_011465_030 Hb_011465_030 Hb_002849_080--Hb_011465_030 Hb_005038_020 Hb_005038_020 Hb_002849_080--Hb_005038_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.25836 5.39675 0.235215 1.04617 3.27639 4.44834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.41126 1.24909 0.653161 2.62038 0.193981

CAGE analysis