Hb_003299_080

Information

Type -
Description -
Location Contig3299: 124601-125841
Sequence    

Annotation

kegg
ID rcu:RCOM_0698810
description hypothetical protein
nr
ID XP_012091965.1
description PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JES6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21714 PE=4 SV=1
Gene Ontology
ID GO:0005829
description glycine-rich isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34668: 124647-137241
cDNA
(Sanger)
(ID:Location)		 008_P19.ab1: 124648-125326

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003299_080 0.0 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
2 Hb_001247_140 0.0786053691 - - -
3 Hb_013753_010 0.1100447788 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
4 Hb_031089_030 0.1111040925 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
5 Hb_005038_020 0.1111240471 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_002609_010 0.1219262037 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
7 Hb_002078_420 0.1243537848 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
8 Hb_000365_060 0.1279470768 - - 5'->3' exoribonuclease, putative [Ricinus communis]
9 Hb_000016_280 0.1283755569 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
10 Hb_000212_130 0.1294756551 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001247_230 0.134307172 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_148209_020 0.1383363657 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
13 Hb_101151_020 0.1406020733 - - DNA binding protein, putative [Ricinus communis]
14 Hb_000375_370 0.1417233142 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
15 Hb_005843_040 0.1453942764 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
16 Hb_000787_100 0.1474724343 - - PREDICTED: thiamine thiazole synthase, chloroplastic [Jatropha curcas]
17 Hb_002849_080 0.1475679423 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
18 Hb_004206_040 0.1477090911 - - cytochrome P450, putative [Ricinus communis]
19 Hb_012760_200 0.1477511299 - - protein phsophatase-2a, putative [Ricinus communis]
20 Hb_012395_160 0.1487924669 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003299_080 Hb_003299_080 Hb_001247_140 Hb_001247_140 Hb_003299_080--Hb_001247_140 Hb_013753_010 Hb_013753_010 Hb_003299_080--Hb_013753_010 Hb_031089_030 Hb_031089_030 Hb_003299_080--Hb_031089_030 Hb_005038_020 Hb_005038_020 Hb_003299_080--Hb_005038_020 Hb_002609_010 Hb_002609_010 Hb_003299_080--Hb_002609_010 Hb_002078_420 Hb_002078_420 Hb_003299_080--Hb_002078_420 Hb_000365_060 Hb_000365_060 Hb_001247_140--Hb_000365_060 Hb_001247_140--Hb_013753_010 Hb_000375_370 Hb_000375_370 Hb_001247_140--Hb_000375_370 Hb_001247_140--Hb_031089_030 Hb_005122_060 Hb_005122_060 Hb_001247_140--Hb_005122_060 Hb_000890_220 Hb_000890_220 Hb_013753_010--Hb_000890_220 Hb_004032_350 Hb_004032_350 Hb_013753_010--Hb_004032_350 Hb_012760_200 Hb_012760_200 Hb_013753_010--Hb_012760_200 Hb_101151_020 Hb_101151_020 Hb_013753_010--Hb_101151_020 Hb_000331_480 Hb_000331_480 Hb_013753_010--Hb_000331_480 Hb_025048_040 Hb_025048_040 Hb_013753_010--Hb_025048_040 Hb_007257_050 Hb_007257_050 Hb_031089_030--Hb_007257_050 Hb_084429_010 Hb_084429_010 Hb_031089_030--Hb_084429_010 Hb_001396_260 Hb_001396_260 Hb_031089_030--Hb_001396_260 Hb_031089_030--Hb_000375_370 Hb_005399_020 Hb_005399_020 Hb_005038_020--Hb_005399_020 Hb_012395_160 Hb_012395_160 Hb_005038_020--Hb_012395_160 Hb_002849_080 Hb_002849_080 Hb_005038_020--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_005038_020--Hb_148209_020 Hb_005038_020--Hb_002078_420 Hb_000174_200 Hb_000174_200 Hb_005038_020--Hb_000174_200 Hb_002609_010--Hb_002849_080 Hb_002609_010--Hb_148209_020 Hb_006316_070 Hb_006316_070 Hb_002609_010--Hb_006316_070 Hb_000413_170 Hb_000413_170 Hb_002609_010--Hb_000413_170 Hb_001247_230 Hb_001247_230 Hb_002609_010--Hb_001247_230 Hb_000265_250 Hb_000265_250 Hb_002609_010--Hb_000265_250 Hb_000029_160 Hb_000029_160 Hb_002078_420--Hb_000029_160 Hb_000172_550 Hb_000172_550 Hb_002078_420--Hb_000172_550 Hb_000016_280 Hb_000016_280 Hb_002078_420--Hb_000016_280 Hb_002078_420--Hb_013753_010 Hb_002078_420--Hb_000331_480 Hb_000076_290 Hb_000076_290 Hb_002078_420--Hb_000076_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1354.97 1371.14 69.9232 83.0998 1612.2 1764.19
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
310.73 184.674 271.73 366.717 46.2502

CAGE analysis