Hb_000413_170

Information

Type -
Description -
Location Contig413: 153214-154443
Sequence    

Annotation

kegg
ID tcc:TCM_030078
description Histone H2A 10
nr
ID XP_012091427.1
description PREDICTED: probable histone H2A.3 [Jatropha curcas]
swissprot
ID O65759
description Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1
trembl
ID A0A067JDJ8
description Histone H2A OS=Jatropha curcas GN=JCGZ_21294 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone h2ax

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40934: 152969-155076
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_170 0.0 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
2 Hb_002609_010 0.1009619303 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
3 Hb_001907_060 0.124996755 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
4 Hb_007348_030 0.1357628275 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
5 Hb_004225_130 0.135968965 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]
6 Hb_148209_020 0.1422465774 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
7 Hb_010883_080 0.1452676713 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
8 Hb_101151_020 0.1473372504 - - DNA binding protein, putative [Ricinus communis]
9 Hb_002612_010 0.1480899241 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
10 Hb_000116_570 0.1481434048 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
11 Hb_000016_280 0.14834324 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
12 Hb_000365_060 0.1502338131 - - 5'->3' exoribonuclease, putative [Ricinus communis]
13 Hb_001396_290 0.1503450177 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
14 Hb_009646_050 0.1507795043 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000685_080 0.150903723 - - protein binding protein, putative [Ricinus communis]
16 Hb_000265_250 0.1519293066 - - auxilin, putative [Ricinus communis]
17 Hb_006829_090 0.1530568044 - - PREDICTED: protein MOS2 [Jatropha curcas]
18 Hb_000212_130 0.1551720022 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003492_010 0.1558493381 - - DREPP plasma membrane polypeptide family protein [Populus trichocarpa]
20 Hb_005399_020 0.1573863896 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]

Gene co-expression network

sample Hb_000413_170 Hb_000413_170 Hb_002609_010 Hb_002609_010 Hb_000413_170--Hb_002609_010 Hb_001907_060 Hb_001907_060 Hb_000413_170--Hb_001907_060 Hb_007348_030 Hb_007348_030 Hb_000413_170--Hb_007348_030 Hb_004225_130 Hb_004225_130 Hb_000413_170--Hb_004225_130 Hb_148209_020 Hb_148209_020 Hb_000413_170--Hb_148209_020 Hb_010883_080 Hb_010883_080 Hb_000413_170--Hb_010883_080 Hb_002849_080 Hb_002849_080 Hb_002609_010--Hb_002849_080 Hb_002609_010--Hb_148209_020 Hb_006316_070 Hb_006316_070 Hb_002609_010--Hb_006316_070 Hb_001247_230 Hb_001247_230 Hb_002609_010--Hb_001247_230 Hb_000265_250 Hb_000265_250 Hb_002609_010--Hb_000265_250 Hb_101151_020 Hb_101151_020 Hb_001907_060--Hb_101151_020 Hb_000792_110 Hb_000792_110 Hb_001907_060--Hb_000792_110 Hb_001907_060--Hb_007348_030 Hb_000211_090 Hb_000211_090 Hb_001907_060--Hb_000211_090 Hb_000608_340 Hb_000608_340 Hb_001907_060--Hb_000608_340 Hb_002374_150 Hb_002374_150 Hb_001907_060--Hb_002374_150 Hb_000244_240 Hb_000244_240 Hb_007348_030--Hb_000244_240 Hb_007348_030--Hb_101151_020 Hb_000365_060 Hb_000365_060 Hb_007348_030--Hb_000365_060 Hb_000120_510 Hb_000120_510 Hb_007348_030--Hb_000120_510 Hb_001278_060 Hb_001278_060 Hb_007348_030--Hb_001278_060 Hb_001301_210 Hb_001301_210 Hb_007348_030--Hb_001301_210 Hb_002235_320 Hb_002235_320 Hb_004225_130--Hb_002235_320 Hb_001396_290 Hb_001396_290 Hb_004225_130--Hb_001396_290 Hb_002048_090 Hb_002048_090 Hb_004225_130--Hb_002048_090 Hb_006002_030 Hb_006002_030 Hb_004225_130--Hb_006002_030 Hb_000239_070 Hb_000239_070 Hb_004225_130--Hb_000239_070 Hb_002411_120 Hb_002411_120 Hb_004225_130--Hb_002411_120 Hb_148209_020--Hb_002849_080 Hb_012395_160 Hb_012395_160 Hb_148209_020--Hb_012395_160 Hb_148209_020--Hb_006316_070 Hb_002477_150 Hb_002477_150 Hb_148209_020--Hb_002477_150 Hb_002977_010 Hb_002977_010 Hb_148209_020--Hb_002977_010 Hb_005399_020 Hb_005399_020 Hb_148209_020--Hb_005399_020 Hb_000116_570 Hb_000116_570 Hb_010883_080--Hb_000116_570 Hb_001473_080 Hb_001473_080 Hb_010883_080--Hb_001473_080 Hb_000016_280 Hb_000016_280 Hb_010883_080--Hb_000016_280 Hb_000685_080 Hb_000685_080 Hb_010883_080--Hb_000685_080 Hb_001922_130 Hb_001922_130 Hb_010883_080--Hb_001922_130 Hb_000186_260 Hb_000186_260 Hb_010883_080--Hb_000186_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.7275 57.2814 16.7052 8.05338 76.4859 97.5702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0327 12.5812 7.02018 8.05945 6.8429

CAGE analysis