Hb_000186_260

Information

Type transcription factor
Description TF Family: PHD
Location Contig186: 320742-324034
Sequence    

Annotation

kegg
ID rcu:RCOM_0903310
description phd finger transcription factor, putative
nr
ID XP_012091292.1
description PREDICTED: protein polybromo-1-like [Jatropha curcas]
swissprot
ID Q9P281
description BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=BAHCC1 PE=1 SV=3
trembl
ID A0A067JAB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21172 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein polybromo-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18243: 322495-323007 , PASA_asmbl_18244: 320762-324043 , PASA_asmbl_18245: 320724-323979
cDNA
(Sanger)
(ID:Location)		 002_K07.ab1: 320762-323745 , 025_P14.ab1: 320788-322472 , 041_J12.ab1: 320762-322375

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000186_260 0.0 transcription factor TF Family: PHD PREDICTED: protein polybromo-1-like [Jatropha curcas]
2 Hb_000504_160 0.079699811 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
3 Hb_002659_060 0.0878950141 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
4 Hb_000331_160 0.0941696606 - - adenylate kinase 1 chloroplast, putative [Ricinus communis]
5 Hb_001473_080 0.0947576152 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
6 Hb_001396_290 0.0952426482 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
7 Hb_004017_040 0.0981015671 - - kinetochore protein nuf2, putative [Ricinus communis]
8 Hb_010883_080 0.0988545659 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
9 Hb_110482_010 0.1003765248 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
10 Hb_002411_180 0.1006431594 - - PREDICTED: THO complex subunit 1 isoform X1 [Jatropha curcas]
11 Hb_023020_060 0.1010067219 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
12 Hb_009178_020 0.1020982232 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
13 Hb_000098_130 0.1034855938 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
14 Hb_004374_150 0.1037208743 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]
15 Hb_000953_030 0.1067791058 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
16 Hb_001922_130 0.1073670111 - - hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
17 Hb_032202_240 0.1078002365 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
18 Hb_000640_020 0.1118791206 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
19 Hb_009838_130 0.1119027343 - - hypothetical protein CISIN_1g010403mg [Citrus sinensis]
20 Hb_009913_050 0.1124980201 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]

Gene co-expression network

sample Hb_000186_260 Hb_000186_260 Hb_000504_160 Hb_000504_160 Hb_000186_260--Hb_000504_160 Hb_002659_060 Hb_002659_060 Hb_000186_260--Hb_002659_060 Hb_000331_160 Hb_000331_160 Hb_000186_260--Hb_000331_160 Hb_001473_080 Hb_001473_080 Hb_000186_260--Hb_001473_080 Hb_001396_290 Hb_001396_290 Hb_000186_260--Hb_001396_290 Hb_004017_040 Hb_004017_040 Hb_000186_260--Hb_004017_040 Hb_000504_160--Hb_002659_060 Hb_000504_160--Hb_001396_290 Hb_000343_210 Hb_000343_210 Hb_000504_160--Hb_000343_210 Hb_001946_300 Hb_001946_300 Hb_000504_160--Hb_001946_300 Hb_000640_020 Hb_000640_020 Hb_000504_160--Hb_000640_020 Hb_006829_090 Hb_006829_090 Hb_000504_160--Hb_006829_090 Hb_000120_610 Hb_000120_610 Hb_002659_060--Hb_000120_610 Hb_000594_020 Hb_000594_020 Hb_002659_060--Hb_000594_020 Hb_004920_130 Hb_004920_130 Hb_002659_060--Hb_004920_130 Hb_033883_060 Hb_033883_060 Hb_002659_060--Hb_033883_060 Hb_004635_050 Hb_004635_050 Hb_002659_060--Hb_004635_050 Hb_000331_160--Hb_000640_020 Hb_032202_240 Hb_032202_240 Hb_000331_160--Hb_032202_240 Hb_002326_020 Hb_002326_020 Hb_000331_160--Hb_002326_020 Hb_023020_060 Hb_023020_060 Hb_000331_160--Hb_023020_060 Hb_001492_010 Hb_001492_010 Hb_000331_160--Hb_001492_010 Hb_000331_160--Hb_000504_160 Hb_001922_130 Hb_001922_130 Hb_001473_080--Hb_001922_130 Hb_001946_240 Hb_001946_240 Hb_001473_080--Hb_001946_240 Hb_003125_060 Hb_003125_060 Hb_001473_080--Hb_003125_060 Hb_000120_570 Hb_000120_570 Hb_001473_080--Hb_000120_570 Hb_010883_080 Hb_010883_080 Hb_001473_080--Hb_010883_080 Hb_002675_040 Hb_002675_040 Hb_001473_080--Hb_002675_040 Hb_000120_510 Hb_000120_510 Hb_001396_290--Hb_000120_510 Hb_004225_130 Hb_004225_130 Hb_001396_290--Hb_004225_130 Hb_002048_090 Hb_002048_090 Hb_001396_290--Hb_002048_090 Hb_001396_290--Hb_006829_090 Hb_073171_080 Hb_073171_080 Hb_001396_290--Hb_073171_080 Hb_000261_290 Hb_000261_290 Hb_004017_040--Hb_000261_290 Hb_004017_040--Hb_000331_160 Hb_000098_130 Hb_000098_130 Hb_004017_040--Hb_000098_130 Hb_000953_030 Hb_000953_030 Hb_004017_040--Hb_000953_030 Hb_004017_040--Hb_001946_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
150.558 110.018 60.4724 27.7269 155.462 132.363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
80.0472 34.6196 17.1809 53.5228 18.5813

CAGE analysis