Hb_004017_040

Information

Type -
Description -
Location Contig4017: 66936-71905
Sequence    

Annotation

kegg
ID rcu:RCOM_1319100
description kinetochore protein nuf2, putative
nr
ID XP_002529275.1
description kinetochore protein nuf2, putative [Ricinus communis]
swissprot
ID Q7ZW63
description Kinetochore protein Nuf2 OS=Danio rerio GN=nuf2 PE=2 SV=1
trembl
ID B9STF6
description Kinetochore protein nuf2, putative OS=Ricinus communis GN=RCOM_1319100 PE=4 SV=1
Gene Ontology
ID GO:0000775
description probable kinetochore protein nuf2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39903: 67121-70931 , PASA_asmbl_39904: 70949-71922
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004017_040 0.0 - - kinetochore protein nuf2, putative [Ricinus communis]
2 Hb_000261_290 0.0884365949 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
3 Hb_000331_160 0.0887012672 - - adenylate kinase 1 chloroplast, putative [Ricinus communis]
4 Hb_000098_130 0.0904048819 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
5 Hb_000953_030 0.0918081975 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
6 Hb_000186_260 0.0981015671 transcription factor TF Family: PHD PREDICTED: protein polybromo-1-like [Jatropha curcas]
7 Hb_001946_300 0.1031771206 - - PREDICTED: F-box protein At-B [Jatropha curcas]
8 Hb_000504_160 0.1045906826 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
9 Hb_003106_150 0.1065133286 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
10 Hb_002326_020 0.1068008837 - - hypothetical protein POPTR_0002s13160g [Populus trichocarpa]
11 Hb_009178_020 0.1082863522 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
12 Hb_005333_030 0.1097700074 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
13 Hb_002849_080 0.1111587368 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
14 Hb_000034_160 0.1111963526 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
15 Hb_005539_190 0.1114284622 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
16 Hb_007403_050 0.112438847 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
17 Hb_110482_010 0.1125890901 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
18 Hb_128376_010 0.1132568586 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_001662_030 0.1132587788 - - PREDICTED: F-box protein SKIP23-like [Populus euphratica]
20 Hb_009028_030 0.1141212289 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_004017_040 Hb_004017_040 Hb_000261_290 Hb_000261_290 Hb_004017_040--Hb_000261_290 Hb_000331_160 Hb_000331_160 Hb_004017_040--Hb_000331_160 Hb_000098_130 Hb_000098_130 Hb_004017_040--Hb_000098_130 Hb_000953_030 Hb_000953_030 Hb_004017_040--Hb_000953_030 Hb_000186_260 Hb_000186_260 Hb_004017_040--Hb_000186_260 Hb_001946_300 Hb_001946_300 Hb_004017_040--Hb_001946_300 Hb_000261_290--Hb_000098_130 Hb_004899_070 Hb_004899_070 Hb_000261_290--Hb_004899_070 Hb_000120_620 Hb_000120_620 Hb_000261_290--Hb_000120_620 Hb_000313_340 Hb_000313_340 Hb_000261_290--Hb_000313_340 Hb_003097_180 Hb_003097_180 Hb_000261_290--Hb_003097_180 Hb_006588_050 Hb_006588_050 Hb_000261_290--Hb_006588_050 Hb_000640_020 Hb_000640_020 Hb_000331_160--Hb_000640_020 Hb_032202_240 Hb_032202_240 Hb_000331_160--Hb_032202_240 Hb_002326_020 Hb_002326_020 Hb_000331_160--Hb_002326_020 Hb_023020_060 Hb_023020_060 Hb_000331_160--Hb_023020_060 Hb_001492_010 Hb_001492_010 Hb_000331_160--Hb_001492_010 Hb_000504_160 Hb_000504_160 Hb_000331_160--Hb_000504_160 Hb_000098_130--Hb_004899_070 Hb_000098_130--Hb_000120_620 Hb_000098_130--Hb_003097_180 Hb_000363_130 Hb_000363_130 Hb_000098_130--Hb_000363_130 Hb_000300_360 Hb_000300_360 Hb_000098_130--Hb_000300_360 Hb_000152_340 Hb_000152_340 Hb_000953_030--Hb_000152_340 Hb_000953_030--Hb_001946_300 Hb_005539_190 Hb_005539_190 Hb_000953_030--Hb_005539_190 Hb_004635_050 Hb_004635_050 Hb_000953_030--Hb_004635_050 Hb_102129_070 Hb_102129_070 Hb_000953_030--Hb_102129_070 Hb_000953_030--Hb_002326_020 Hb_000186_260--Hb_000504_160 Hb_002659_060 Hb_002659_060 Hb_000186_260--Hb_002659_060 Hb_000186_260--Hb_000331_160 Hb_001473_080 Hb_001473_080 Hb_000186_260--Hb_001473_080 Hb_001396_290 Hb_001396_290 Hb_000186_260--Hb_001396_290 Hb_001946_300--Hb_000363_130 Hb_001946_300--Hb_000313_340 Hb_140049_020 Hb_140049_020 Hb_001946_300--Hb_140049_020 Hb_147737_010 Hb_147737_010 Hb_001946_300--Hb_147737_010 Hb_001946_300--Hb_032202_240 Hb_001946_300--Hb_000504_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.1139 29.4454 12.601 9.73503 30.0313 24.9401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.74501 7.18774 5.02782 12.7678 2.29733

CAGE analysis