Hb_001473_080

Information

Type -
Description -
Location Contig1473: 72397-75913
Sequence    

Annotation

kegg
ID cic:CICLE_v10004931mg
description hypothetical protein
nr
ID AFJ74324.1
description peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
swissprot
ID Q56WD9
description 3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2
trembl
ID A0A067DL37
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012506mg PE=3 SV=1
Gene Ontology
ID GO:0005730
description 3-ketoacyl- thiolase peroxisomal

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11982: 72406-75872 , PASA_asmbl_11983: 72399-75903
cDNA
(Sanger)
(ID:Location)		 048_P13.ab1: 72420-73859

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001473_080 0.0 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
2 Hb_001922_130 0.0818682059 - - hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
3 Hb_001946_240 0.0846976106 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
4 Hb_003125_060 0.089163717 - - PREDICTED: snurportin-1 [Jatropha curcas]
5 Hb_000120_570 0.0918779828 - - Mlo protein [Hevea brasiliensis]
6 Hb_010883_080 0.0920914085 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
7 Hb_002675_040 0.0931630213 - - ran-binding protein, putative [Ricinus communis]
8 Hb_001474_030 0.0937912355 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
9 Hb_000685_080 0.094079496 - - protein binding protein, putative [Ricinus communis]
10 Hb_000186_260 0.0947576152 transcription factor TF Family: PHD PREDICTED: protein polybromo-1-like [Jatropha curcas]
11 Hb_009178_020 0.0950788543 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
12 Hb_000504_160 0.0956706081 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
13 Hb_002612_010 0.0960241835 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
14 Hb_001489_070 0.0968315762 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
15 Hb_023020_060 0.0976337921 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
16 Hb_004899_030 0.098029283 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
17 Hb_000640_020 0.0997685875 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
18 Hb_004920_060 0.1017124087 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
19 Hb_033594_020 0.1029742649 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
20 Hb_006002_030 0.1040124601 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001473_080 Hb_001473_080 Hb_001922_130 Hb_001922_130 Hb_001473_080--Hb_001922_130 Hb_001946_240 Hb_001946_240 Hb_001473_080--Hb_001946_240 Hb_003125_060 Hb_003125_060 Hb_001473_080--Hb_003125_060 Hb_000120_570 Hb_000120_570 Hb_001473_080--Hb_000120_570 Hb_010883_080 Hb_010883_080 Hb_001473_080--Hb_010883_080 Hb_002675_040 Hb_002675_040 Hb_001473_080--Hb_002675_040 Hb_001922_130--Hb_000120_570 Hb_001922_130--Hb_010883_080 Hb_004374_150 Hb_004374_150 Hb_001922_130--Hb_004374_150 Hb_000116_570 Hb_000116_570 Hb_001922_130--Hb_000116_570 Hb_000186_260 Hb_000186_260 Hb_001922_130--Hb_000186_260 Hb_000116_460 Hb_000116_460 Hb_001946_240--Hb_000116_460 Hb_000504_160 Hb_000504_160 Hb_001946_240--Hb_000504_160 Hb_003540_160 Hb_003540_160 Hb_001946_240--Hb_003540_160 Hb_001946_240--Hb_002675_040 Hb_000953_030 Hb_000953_030 Hb_001946_240--Hb_000953_030 Hb_002133_030 Hb_002133_030 Hb_003125_060--Hb_002133_030 Hb_000685_080 Hb_000685_080 Hb_003125_060--Hb_000685_080 Hb_027405_020 Hb_027405_020 Hb_003125_060--Hb_027405_020 Hb_000487_100 Hb_000487_100 Hb_003125_060--Hb_000487_100 Hb_023020_060 Hb_023020_060 Hb_003125_060--Hb_023020_060 Hb_007305_010 Hb_007305_010 Hb_003125_060--Hb_007305_010 Hb_001534_070 Hb_001534_070 Hb_000120_570--Hb_001534_070 Hb_009178_020 Hb_009178_020 Hb_000120_570--Hb_009178_020 Hb_000120_570--Hb_000685_080 Hb_000120_570--Hb_004374_150 Hb_010883_080--Hb_000116_570 Hb_000016_280 Hb_000016_280 Hb_010883_080--Hb_000016_280 Hb_010883_080--Hb_000685_080 Hb_010883_080--Hb_000186_260 Hb_033594_020 Hb_033594_020 Hb_002675_040--Hb_033594_020 Hb_017895_020 Hb_017895_020 Hb_002675_040--Hb_017895_020 Hb_000343_210 Hb_000343_210 Hb_002675_040--Hb_000343_210 Hb_001900_120 Hb_001900_120 Hb_002675_040--Hb_001900_120 Hb_000329_130 Hb_000329_130 Hb_002675_040--Hb_000329_130 Hb_008725_130 Hb_008725_130 Hb_002675_040--Hb_008725_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
345.112 175.469 142.348 62.4476 436.346 264.571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
114.905 62.6263 58.8222 92.5026 44.234

CAGE analysis