Hb_009178_020

Information

Type -
Description -
Location Contig9178: 9304-12001
Sequence    

Annotation

kegg
ID rcu:RCOM_0204840
description transcription factor, putative
nr
ID XP_012076333.1
description PREDICTED: zinc finger protein 622 [Jatropha curcas]
swissprot
ID O59811
description Cytoplasmic 60S subunit biogenesis factor SPCC550.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.15c PE=1 SV=1
trembl
ID A0A067KBC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07013 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein 622-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62301: 9326-11975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009178_020 0.0 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
2 Hb_000953_030 0.0903968988 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
3 Hb_001474_030 0.09466073 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
4 Hb_001473_080 0.0950788543 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
5 Hb_000685_080 0.095428837 - - protein binding protein, putative [Ricinus communis]
6 Hb_000504_160 0.101194906 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
7 Hb_000186_260 0.1020982232 transcription factor TF Family: PHD PREDICTED: protein polybromo-1-like [Jatropha curcas]
8 Hb_003126_030 0.1027698685 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001529_060 0.1034209271 - - PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Jatropha curcas]
10 Hb_000120_570 0.1064884514 - - Mlo protein [Hevea brasiliensis]
11 Hb_002977_010 0.1066723666 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
12 Hb_011386_040 0.107535144 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
13 Hb_004017_040 0.1082863522 - - kinetochore protein nuf2, putative [Ricinus communis]
14 Hb_102129_070 0.1085152341 - - PREDICTED: coiled-coil domain-containing protein 124 [Cucumis melo]
15 Hb_004374_150 0.108823769 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]
16 Hb_000640_020 0.1100802795 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
17 Hb_001922_130 0.1101077916 - - hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
18 Hb_002133_030 0.1103007498 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
19 Hb_023020_060 0.1104962969 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
20 Hb_005539_190 0.1105690009 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]

Gene co-expression network

sample Hb_009178_020 Hb_009178_020 Hb_000953_030 Hb_000953_030 Hb_009178_020--Hb_000953_030 Hb_001474_030 Hb_001474_030 Hb_009178_020--Hb_001474_030 Hb_001473_080 Hb_001473_080 Hb_009178_020--Hb_001473_080 Hb_000685_080 Hb_000685_080 Hb_009178_020--Hb_000685_080 Hb_000504_160 Hb_000504_160 Hb_009178_020--Hb_000504_160 Hb_000186_260 Hb_000186_260 Hb_009178_020--Hb_000186_260 Hb_000152_340 Hb_000152_340 Hb_000953_030--Hb_000152_340 Hb_001946_300 Hb_001946_300 Hb_000953_030--Hb_001946_300 Hb_005539_190 Hb_005539_190 Hb_000953_030--Hb_005539_190 Hb_004635_050 Hb_004635_050 Hb_000953_030--Hb_004635_050 Hb_102129_070 Hb_102129_070 Hb_000953_030--Hb_102129_070 Hb_002326_020 Hb_002326_020 Hb_000953_030--Hb_002326_020 Hb_002276_050 Hb_002276_050 Hb_001474_030--Hb_002276_050 Hb_000740_070 Hb_000740_070 Hb_001474_030--Hb_000740_070 Hb_073171_080 Hb_073171_080 Hb_001474_030--Hb_073171_080 Hb_000236_280 Hb_000236_280 Hb_001474_030--Hb_000236_280 Hb_002133_030 Hb_002133_030 Hb_001474_030--Hb_002133_030 Hb_001396_290 Hb_001396_290 Hb_001474_030--Hb_001396_290 Hb_001922_130 Hb_001922_130 Hb_001473_080--Hb_001922_130 Hb_001946_240 Hb_001946_240 Hb_001473_080--Hb_001946_240 Hb_003125_060 Hb_003125_060 Hb_001473_080--Hb_003125_060 Hb_000120_570 Hb_000120_570 Hb_001473_080--Hb_000120_570 Hb_010883_080 Hb_010883_080 Hb_001473_080--Hb_010883_080 Hb_002675_040 Hb_002675_040 Hb_001473_080--Hb_002675_040 Hb_000685_080--Hb_003125_060 Hb_009646_050 Hb_009646_050 Hb_000685_080--Hb_009646_050 Hb_005399_020 Hb_005399_020 Hb_000685_080--Hb_005399_020 Hb_000016_280 Hb_000016_280 Hb_000685_080--Hb_000016_280 Hb_002977_010 Hb_002977_010 Hb_000685_080--Hb_002977_010 Hb_000685_080--Hb_002133_030 Hb_002659_060 Hb_002659_060 Hb_000504_160--Hb_002659_060 Hb_000504_160--Hb_001396_290 Hb_000343_210 Hb_000343_210 Hb_000504_160--Hb_000343_210 Hb_000504_160--Hb_001946_300 Hb_000640_020 Hb_000640_020 Hb_000504_160--Hb_000640_020 Hb_006829_090 Hb_006829_090 Hb_000504_160--Hb_006829_090 Hb_000186_260--Hb_000504_160 Hb_000186_260--Hb_002659_060 Hb_000331_160 Hb_000331_160 Hb_000186_260--Hb_000331_160 Hb_000186_260--Hb_001473_080 Hb_000186_260--Hb_001396_290 Hb_004017_040 Hb_004017_040 Hb_000186_260--Hb_004017_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
149.326 106.512 58.5687 17.8369 165.854 107.516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.6711 52.9346 33.1189 51.019 16.0522

CAGE analysis