Hb_002276_050

Information

Type -
Description -
Location Contig2276: 63197-69178
Sequence    

Annotation

kegg
ID pop:POPTR_0008s11200g
description POPTRDRAFT_765989; hypothetical protein
nr
ID XP_012080481.1
description PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
swissprot
ID Q8VWF8
description DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2
trembl
ID A0A067K8S5
description DNA-directed RNA polymerase OS=Jatropha curcas GN=JCGZ_11794 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23733: 67117-68474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002276_050 0.0 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
2 Hb_001474_030 0.0770850935 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
3 Hb_073171_080 0.0887627538 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
4 Hb_033594_020 0.0918961801 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
5 Hb_002675_040 0.0923363261 - - ran-binding protein, putative [Ricinus communis]
6 Hb_000236_280 0.0984119683 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
7 Hb_000104_080 0.1044562874 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
8 Hb_000640_320 0.1045410173 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
9 Hb_000088_200 0.1078987147 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
10 Hb_006829_090 0.108411773 - - PREDICTED: protein MOS2 [Jatropha curcas]
11 Hb_000343_210 0.1096416184 - - ran-binding protein, putative [Ricinus communis]
12 Hb_000805_260 0.1103473299 - - PREDICTED: uncharacterized protein LOC105650295 isoform X1 [Jatropha curcas]
13 Hb_007305_010 0.1108782331 - - PREDICTED: girdin-like [Jatropha curcas]
14 Hb_004241_070 0.1109336297 - - PREDICTED: WD repeat-containing protein 25 [Jatropha curcas]
15 Hb_000120_510 0.1117706486 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
16 Hb_000504_160 0.1124320544 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
17 Hb_028707_090 0.1126640487 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
18 Hb_008143_030 0.113508427 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
19 Hb_004656_060 0.1142529681 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
20 Hb_003656_160 0.1142625123 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]

Gene co-expression network

sample Hb_002276_050 Hb_002276_050 Hb_001474_030 Hb_001474_030 Hb_002276_050--Hb_001474_030 Hb_073171_080 Hb_073171_080 Hb_002276_050--Hb_073171_080 Hb_033594_020 Hb_033594_020 Hb_002276_050--Hb_033594_020 Hb_002675_040 Hb_002675_040 Hb_002276_050--Hb_002675_040 Hb_000236_280 Hb_000236_280 Hb_002276_050--Hb_000236_280 Hb_000104_080 Hb_000104_080 Hb_002276_050--Hb_000104_080 Hb_000740_070 Hb_000740_070 Hb_001474_030--Hb_000740_070 Hb_001474_030--Hb_073171_080 Hb_001474_030--Hb_000236_280 Hb_002133_030 Hb_002133_030 Hb_001474_030--Hb_002133_030 Hb_001396_290 Hb_001396_290 Hb_001474_030--Hb_001396_290 Hb_000684_420 Hb_000684_420 Hb_073171_080--Hb_000684_420 Hb_004724_360 Hb_004724_360 Hb_073171_080--Hb_004724_360 Hb_000327_310 Hb_000327_310 Hb_073171_080--Hb_000327_310 Hb_073171_080--Hb_000236_280 Hb_073171_080--Hb_001396_290 Hb_002400_180 Hb_002400_180 Hb_073171_080--Hb_002400_180 Hb_033594_020--Hb_002675_040 Hb_046615_020 Hb_046615_020 Hb_033594_020--Hb_046615_020 Hb_000343_210 Hb_000343_210 Hb_033594_020--Hb_000343_210 Hb_007885_070 Hb_007885_070 Hb_033594_020--Hb_007885_070 Hb_003656_160 Hb_003656_160 Hb_033594_020--Hb_003656_160 Hb_017895_020 Hb_017895_020 Hb_033594_020--Hb_017895_020 Hb_002675_040--Hb_017895_020 Hb_002675_040--Hb_000343_210 Hb_001900_120 Hb_001900_120 Hb_002675_040--Hb_001900_120 Hb_000329_130 Hb_000329_130 Hb_002675_040--Hb_000329_130 Hb_008725_130 Hb_008725_130 Hb_002675_040--Hb_008725_130 Hb_004241_070 Hb_004241_070 Hb_000236_280--Hb_004241_070 Hb_000236_280--Hb_000104_080 Hb_000088_200 Hb_000088_200 Hb_000236_280--Hb_000088_200 Hb_004044_020 Hb_004044_020 Hb_000236_280--Hb_004044_020 Hb_004525_100 Hb_004525_100 Hb_000236_280--Hb_004525_100 Hb_000923_040 Hb_000923_040 Hb_000104_080--Hb_000923_040 Hb_028707_090 Hb_028707_090 Hb_000104_080--Hb_028707_090 Hb_001584_290 Hb_001584_290 Hb_000104_080--Hb_001584_290 Hb_008143_030 Hb_008143_030 Hb_000104_080--Hb_008143_030 Hb_023001_020 Hb_023001_020 Hb_000104_080--Hb_023001_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.4504 13.3976 9.27989 2.99589 28.6206 22.8522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.41162 9.71851 6.93299 5.65446 9.01648

CAGE analysis