Hb_004241_070

Information

Type -
Description -
Location Contig4241: 63866-71318
Sequence    

Annotation

kegg
ID vvi:100250407
description WD repeat-containing protein 25
nr
ID XP_012070696.1
description PREDICTED: WD repeat-containing protein 25 [Jatropha curcas]
swissprot
ID E9Q349
description WD repeat-containing protein 25 OS=Mus musculus GN=Wdr25 PE=2 SV=1
trembl
ID A0A067L3C0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00757 PE=4 SV=1
Gene Ontology
ID GO:0005515
description wd repeat-containing protein 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41942: 63927-71315 , PASA_asmbl_41943: 63927-70019 , PASA_asmbl_41944: 69193-71313
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004241_070 0.0 - - PREDICTED: WD repeat-containing protein 25 [Jatropha curcas]
2 Hb_000236_280 0.0640634929 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
3 Hb_002942_220 0.0812312425 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
4 Hb_000923_040 0.0863034676 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
5 Hb_000104_080 0.0864461358 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
6 Hb_002007_350 0.0885945839 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
7 Hb_012305_070 0.0888946709 - - conserved hypothetical protein [Ricinus communis]
8 Hb_023001_020 0.0898259257 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
9 Hb_008887_050 0.0903573638 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
10 Hb_001541_260 0.0916340963 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
11 Hb_000139_250 0.0930413619 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
12 Hb_001226_180 0.0933682169 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
13 Hb_001014_010 0.0951355059 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
14 Hb_007305_010 0.0959358804 - - PREDICTED: girdin-like [Jatropha curcas]
15 Hb_000205_120 0.096048456 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
16 Hb_004678_020 0.0965825739 - - PREDICTED: protein YIF1B [Jatropha curcas]
17 Hb_005701_040 0.096889864 - - cellular nucleic acid binding protein, putative [Ricinus communis]
18 Hb_003656_160 0.0970250924 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
19 Hb_001158_040 0.098677625 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
20 Hb_005237_060 0.0986995172 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]

Gene co-expression network

sample Hb_004241_070 Hb_004241_070 Hb_000236_280 Hb_000236_280 Hb_004241_070--Hb_000236_280 Hb_002942_220 Hb_002942_220 Hb_004241_070--Hb_002942_220 Hb_000923_040 Hb_000923_040 Hb_004241_070--Hb_000923_040 Hb_000104_080 Hb_000104_080 Hb_004241_070--Hb_000104_080 Hb_002007_350 Hb_002007_350 Hb_004241_070--Hb_002007_350 Hb_012305_070 Hb_012305_070 Hb_004241_070--Hb_012305_070 Hb_000236_280--Hb_000104_080 Hb_073171_080 Hb_073171_080 Hb_000236_280--Hb_073171_080 Hb_000088_200 Hb_000088_200 Hb_000236_280--Hb_000088_200 Hb_004044_020 Hb_004044_020 Hb_000236_280--Hb_004044_020 Hb_004525_100 Hb_004525_100 Hb_000236_280--Hb_004525_100 Hb_000139_250 Hb_000139_250 Hb_002942_220--Hb_000139_250 Hb_010222_080 Hb_010222_080 Hb_002942_220--Hb_010222_080 Hb_002400_180 Hb_002400_180 Hb_002942_220--Hb_002400_180 Hb_004678_020 Hb_004678_020 Hb_002942_220--Hb_004678_020 Hb_017168_010 Hb_017168_010 Hb_002942_220--Hb_017168_010 Hb_144787_030 Hb_144787_030 Hb_002942_220--Hb_144787_030 Hb_000923_040--Hb_000104_080 Hb_008887_050 Hb_008887_050 Hb_000923_040--Hb_008887_050 Hb_000345_530 Hb_000345_530 Hb_000923_040--Hb_000345_530 Hb_001584_290 Hb_001584_290 Hb_000923_040--Hb_001584_290 Hb_023001_020 Hb_023001_020 Hb_000923_040--Hb_023001_020 Hb_001040_040 Hb_001040_040 Hb_000923_040--Hb_001040_040 Hb_028707_090 Hb_028707_090 Hb_000104_080--Hb_028707_090 Hb_000104_080--Hb_001584_290 Hb_008143_030 Hb_008143_030 Hb_000104_080--Hb_008143_030 Hb_000104_080--Hb_023001_020 Hb_009265_080 Hb_009265_080 Hb_002007_350--Hb_009265_080 Hb_008253_010 Hb_008253_010 Hb_002007_350--Hb_008253_010 Hb_004678_060 Hb_004678_060 Hb_002007_350--Hb_004678_060 Hb_007590_080 Hb_007590_080 Hb_002007_350--Hb_007590_080 Hb_000803_300 Hb_000803_300 Hb_002007_350--Hb_000803_300 Hb_003656_160 Hb_003656_160 Hb_002007_350--Hb_003656_160 Hb_000684_420 Hb_000684_420 Hb_012305_070--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_012305_070--Hb_000645_150 Hb_000186_280 Hb_000186_280 Hb_012305_070--Hb_000186_280 Hb_001014_010 Hb_001014_010 Hb_012305_070--Hb_001014_010 Hb_000236_370 Hb_000236_370 Hb_012305_070--Hb_000236_370 Hb_003384_030 Hb_003384_030 Hb_012305_070--Hb_003384_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.1847 15.1361 11.779 4.80188 44.1351 25.585
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.0381 16.4589 13.6143 8.09107 8.06709

CAGE analysis