Hb_000331_160

Information

Type -
Description -
Location Contig331: 135935-140881
Sequence    

Annotation

kegg
ID rcu:RCOM_1506650
description adenylate kinase 1 chloroplast, putative
nr
ID XP_002511210.1
description adenylate kinase 1 chloroplast, putative [Ricinus communis]
swissprot
ID Q6ZJ48
description Probable adenylate kinase 7, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0118900 PE=2 SV=1
trembl
ID B9RAI5
description Adenylate kinase 1 chloroplast, putative OS=Ricinus communis GN=RCOM_1506650 PE=4 SV=1
Gene Ontology
ID GO:0005524
description probable adenylate kinase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34766: 135867-136895 , PASA_asmbl_34767: 136938-140808 , PASA_asmbl_34768: 136938-137644 , PASA_asmbl_34769: 138838-139017
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_160 0.0 - - adenylate kinase 1 chloroplast, putative [Ricinus communis]
2 Hb_000640_020 0.0812018424 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
3 Hb_032202_240 0.083013046 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
4 Hb_002326_020 0.0837147532 - - hypothetical protein POPTR_0002s13160g [Populus trichocarpa]
5 Hb_023020_060 0.0858503068 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
6 Hb_001492_010 0.0861780273 - - PREDICTED: diacylglycerol kinase 3-like isoform X2 [Populus euphratica]
7 Hb_000504_160 0.0869990186 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
8 Hb_004017_040 0.0887012672 - - kinetochore protein nuf2, putative [Ricinus communis]
9 Hb_000953_030 0.0891674985 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
10 Hb_001946_300 0.0898764154 - - PREDICTED: F-box protein At-B [Jatropha curcas]
11 Hb_002659_060 0.0901343741 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
12 Hb_000343_210 0.0912601746 - - ran-binding protein, putative [Ricinus communis]
13 Hb_000120_610 0.0919752693 - - mitotic control protein dis3, putative [Ricinus communis]
14 Hb_003020_110 0.0922978419 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
15 Hb_000261_290 0.0928080248 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
16 Hb_000098_130 0.0934040556 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
17 Hb_000186_260 0.0941696606 transcription factor TF Family: PHD PREDICTED: protein polybromo-1-like [Jatropha curcas]
18 Hb_000417_160 0.0948684517 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
19 Hb_001976_090 0.0963403529 - - PREDICTED: uncharacterized protein LOC105641696 [Jatropha curcas]
20 Hb_001454_320 0.0972270053 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_160 Hb_000331_160 Hb_000640_020 Hb_000640_020 Hb_000331_160--Hb_000640_020 Hb_032202_240 Hb_032202_240 Hb_000331_160--Hb_032202_240 Hb_002326_020 Hb_002326_020 Hb_000331_160--Hb_002326_020 Hb_023020_060 Hb_023020_060 Hb_000331_160--Hb_023020_060 Hb_001492_010 Hb_001492_010 Hb_000331_160--Hb_001492_010 Hb_000504_160 Hb_000504_160 Hb_000331_160--Hb_000504_160 Hb_000640_020--Hb_023020_060 Hb_001894_030 Hb_001894_030 Hb_000640_020--Hb_001894_030 Hb_000343_210 Hb_000343_210 Hb_000640_020--Hb_000343_210 Hb_000640_020--Hb_000504_160 Hb_000104_080 Hb_000104_080 Hb_000640_020--Hb_000104_080 Hb_028707_090 Hb_028707_090 Hb_000640_020--Hb_028707_090 Hb_002977_010 Hb_002977_010 Hb_032202_240--Hb_002977_010 Hb_001946_300 Hb_001946_300 Hb_032202_240--Hb_001946_300 Hb_001616_050 Hb_001616_050 Hb_032202_240--Hb_001616_050 Hb_017075_030 Hb_017075_030 Hb_032202_240--Hb_017075_030 Hb_025477_060 Hb_025477_060 Hb_032202_240--Hb_025477_060 Hb_000258_120 Hb_000258_120 Hb_002326_020--Hb_000258_120 Hb_003680_230 Hb_003680_230 Hb_002326_020--Hb_003680_230 Hb_009252_100 Hb_009252_100 Hb_002326_020--Hb_009252_100 Hb_006816_050 Hb_006816_050 Hb_002326_020--Hb_006816_050 Hb_004635_050 Hb_004635_050 Hb_002326_020--Hb_004635_050 Hb_002133_030 Hb_002133_030 Hb_023020_060--Hb_002133_030 Hb_023020_060--Hb_000343_210 Hb_001396_290 Hb_001396_290 Hb_023020_060--Hb_001396_290 Hb_003020_110 Hb_003020_110 Hb_023020_060--Hb_003020_110 Hb_023020_060--Hb_000504_160 Hb_001454_320 Hb_001454_320 Hb_001492_010--Hb_001454_320 Hb_000215_190 Hb_000215_190 Hb_001492_010--Hb_000215_190 Hb_000120_620 Hb_000120_620 Hb_001492_010--Hb_000120_620 Hb_000160_290 Hb_000160_290 Hb_001492_010--Hb_000160_290 Hb_003124_130 Hb_003124_130 Hb_001492_010--Hb_003124_130 Hb_002659_060 Hb_002659_060 Hb_000504_160--Hb_002659_060 Hb_000504_160--Hb_001396_290 Hb_000504_160--Hb_000343_210 Hb_000504_160--Hb_001946_300 Hb_006829_090 Hb_006829_090 Hb_000504_160--Hb_006829_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.2804 40.9581 17.7219 22.8162 57.3199 47.2497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.4256 14.0738 12.3484 23.5612 7.06696

CAGE analysis