Hb_000215_190

Information

Type -
Description -
Location Contig215: 162515-166723
Sequence    

Annotation

kegg
ID rcu:RCOM_1048940
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_012076842.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]
swissprot
ID Q9FJU9
description Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1
trembl
ID A0A067KPQ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07350 PE=3 SV=1
Gene Ontology
ID GO:0009505
description glucan endo- -beta-glucosidase 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22190: 162496-166513 , PASA_asmbl_22191: 162559-166522
cDNA
(Sanger)
(ID:Location)		 050_B19.ab1: 162568-164656

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_190 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]
2 Hb_001492_010 0.0636094862 - - PREDICTED: diacylglycerol kinase 3-like isoform X2 [Populus euphratica]
3 Hb_001454_320 0.0768192894 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
4 Hb_000836_270 0.0813237136 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
5 Hb_000158_130 0.0903780807 - - PREDICTED: uncharacterized protein LOC105647950 isoform X1 [Jatropha curcas]
6 Hb_003124_130 0.0904159306 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
7 Hb_000645_120 0.0907528576 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
8 Hb_004032_180 0.0922427936 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
9 Hb_000116_060 0.0959761985 - - plant ubiquilin, putative [Ricinus communis]
10 Hb_000510_310 0.0962448967 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
11 Hb_000331_160 0.0990061637 - - adenylate kinase 1 chloroplast, putative [Ricinus communis]
12 Hb_000261_290 0.0991179472 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
13 Hb_001140_350 0.1000101033 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
14 Hb_000162_280 0.1001342681 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
15 Hb_002304_090 0.1022800613 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
16 Hb_000417_160 0.1056752352 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
17 Hb_001377_070 0.1058251487 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000098_130 0.105901013 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
19 Hb_000034_160 0.1062999886 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
20 Hb_000648_100 0.1068817302 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]

Gene co-expression network

sample Hb_000215_190 Hb_000215_190 Hb_001492_010 Hb_001492_010 Hb_000215_190--Hb_001492_010 Hb_001454_320 Hb_001454_320 Hb_000215_190--Hb_001454_320 Hb_000836_270 Hb_000836_270 Hb_000215_190--Hb_000836_270 Hb_000158_130 Hb_000158_130 Hb_000215_190--Hb_000158_130 Hb_003124_130 Hb_003124_130 Hb_000215_190--Hb_003124_130 Hb_000645_120 Hb_000645_120 Hb_000215_190--Hb_000645_120 Hb_001492_010--Hb_001454_320 Hb_000120_620 Hb_000120_620 Hb_001492_010--Hb_000120_620 Hb_000331_160 Hb_000331_160 Hb_001492_010--Hb_000331_160 Hb_000160_290 Hb_000160_290 Hb_001492_010--Hb_000160_290 Hb_001492_010--Hb_003124_130 Hb_000648_100 Hb_000648_100 Hb_001454_320--Hb_000648_100 Hb_001454_320--Hb_003124_130 Hb_001454_320--Hb_000160_290 Hb_000796_190 Hb_000796_190 Hb_001454_320--Hb_000796_190 Hb_007558_120 Hb_007558_120 Hb_001454_320--Hb_007558_120 Hb_000836_270--Hb_000645_120 Hb_001140_350 Hb_001140_350 Hb_000836_270--Hb_001140_350 Hb_000510_310 Hb_000510_310 Hb_000836_270--Hb_000510_310 Hb_001454_280 Hb_001454_280 Hb_000836_270--Hb_001454_280 Hb_005321_020 Hb_005321_020 Hb_000836_270--Hb_005321_020 Hb_000158_130--Hb_003124_130 Hb_000136_090 Hb_000136_090 Hb_000158_130--Hb_000136_090 Hb_000375_130 Hb_000375_130 Hb_000158_130--Hb_000375_130 Hb_012180_050 Hb_012180_050 Hb_000158_130--Hb_012180_050 Hb_000098_130 Hb_000098_130 Hb_000158_130--Hb_000098_130 Hb_000158_130--Hb_001454_320 Hb_000567_010 Hb_000567_010 Hb_003124_130--Hb_000567_010 Hb_003124_130--Hb_000796_190 Hb_147737_010 Hb_147737_010 Hb_003124_130--Hb_147737_010 Hb_003124_130--Hb_000160_290 Hb_000283_070 Hb_000283_070 Hb_000645_120--Hb_000283_070 Hb_000645_120--Hb_001140_350 Hb_008864_110 Hb_008864_110 Hb_000645_120--Hb_008864_110 Hb_000645_120--Hb_005321_020 Hb_000645_120--Hb_000510_310 Hb_000645_120--Hb_003124_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.1696 22.6482 11.0132 12.8364 23.6309 26.4814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0543 4.9485 10.8882 14.4566 3.3223

CAGE analysis