Hb_000640_020

Information

Type -
Description -
Location Contig640: 8356-18900
Sequence    

Annotation

kegg
ID rcu:RCOM_0353310
description dimethyladenosine transferase, putative (EC:2.1.1.48)
nr
ID XP_012082884.1
description PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
swissprot
ID Q9D0D4
description Probable dimethyladenosine transferase OS=Mus musculus GN=Dimt1 PE=2 SV=1
trembl
ID A0A067JWM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14023 PE=4 SV=1
Gene Ontology
ID GO:0005730
description probable dimethyladenosine transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52069: 17140-18863
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_020 0.0 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
2 Hb_023020_060 0.0561018679 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
3 Hb_001894_030 0.0715026641 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
4 Hb_000343_210 0.0745062551 - - ran-binding protein, putative [Ricinus communis]
5 Hb_000504_160 0.0752995338 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
6 Hb_000104_080 0.0756797678 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
7 Hb_028707_090 0.0785665364 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
8 Hb_000331_160 0.0812018424 - - adenylate kinase 1 chloroplast, putative [Ricinus communis]
9 Hb_000640_220 0.0814317749 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
10 Hb_002652_040 0.0825245656 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
11 Hb_000211_110 0.0829031335 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
12 Hb_003020_110 0.0843104764 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
13 Hb_002133_030 0.0850455526 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
14 Hb_000331_190 0.0850744432 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
15 Hb_002477_130 0.0880952296 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005895_040 0.0899921356 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
17 Hb_001474_030 0.0908408948 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
18 Hb_004374_150 0.0914699214 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]
19 Hb_009151_020 0.0919532889 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
20 Hb_004701_030 0.0923596184 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]

Gene co-expression network

sample Hb_000640_020 Hb_000640_020 Hb_023020_060 Hb_023020_060 Hb_000640_020--Hb_023020_060 Hb_001894_030 Hb_001894_030 Hb_000640_020--Hb_001894_030 Hb_000343_210 Hb_000343_210 Hb_000640_020--Hb_000343_210 Hb_000504_160 Hb_000504_160 Hb_000640_020--Hb_000504_160 Hb_000104_080 Hb_000104_080 Hb_000640_020--Hb_000104_080 Hb_028707_090 Hb_028707_090 Hb_000640_020--Hb_028707_090 Hb_002133_030 Hb_002133_030 Hb_023020_060--Hb_002133_030 Hb_023020_060--Hb_000343_210 Hb_001396_290 Hb_001396_290 Hb_023020_060--Hb_001396_290 Hb_003020_110 Hb_003020_110 Hb_023020_060--Hb_003020_110 Hb_023020_060--Hb_000504_160 Hb_000211_110 Hb_000211_110 Hb_001894_030--Hb_000211_110 Hb_000617_220 Hb_000617_220 Hb_001894_030--Hb_000617_220 Hb_001357_380 Hb_001357_380 Hb_001894_030--Hb_001357_380 Hb_011848_010 Hb_011848_010 Hb_001894_030--Hb_011848_010 Hb_004701_030 Hb_004701_030 Hb_001894_030--Hb_004701_030 Hb_147737_010 Hb_147737_010 Hb_000343_210--Hb_147737_010 Hb_002675_040 Hb_002675_040 Hb_000343_210--Hb_002675_040 Hb_000035_040 Hb_000035_040 Hb_000343_210--Hb_000035_040 Hb_000331_190 Hb_000331_190 Hb_000343_210--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_000343_210--Hb_000531_090 Hb_000343_210--Hb_003020_110 Hb_002659_060 Hb_002659_060 Hb_000504_160--Hb_002659_060 Hb_000504_160--Hb_001396_290 Hb_000504_160--Hb_000343_210 Hb_001946_300 Hb_001946_300 Hb_000504_160--Hb_001946_300 Hb_006829_090 Hb_006829_090 Hb_000504_160--Hb_006829_090 Hb_000923_040 Hb_000923_040 Hb_000104_080--Hb_000923_040 Hb_000104_080--Hb_028707_090 Hb_001584_290 Hb_001584_290 Hb_000104_080--Hb_001584_290 Hb_000236_280 Hb_000236_280 Hb_000104_080--Hb_000236_280 Hb_008143_030 Hb_008143_030 Hb_000104_080--Hb_008143_030 Hb_023001_020 Hb_023001_020 Hb_000104_080--Hb_023001_020 Hb_002477_130 Hb_002477_130 Hb_028707_090--Hb_002477_130 Hb_000640_220 Hb_000640_220 Hb_028707_090--Hb_000640_220 Hb_008518_050 Hb_008518_050 Hb_028707_090--Hb_008518_050 Hb_028707_090--Hb_008143_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.9268 18.0222 10.5971 11.394 40.2145 30.0251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4884 12.8508 7.30625 11.9402 6.27379

CAGE analysis