Hb_008518_050

Information

Type -
Description -
Location Contig8518: 63092-68111
Sequence    

Annotation

kegg
ID mdm:103429409
description probable pre-mRNA-splicing factor ATP-dependent RNA helicase
nr
ID KHG04986.1
description hypothetical protein F383_31148 [Gossypium arboreum]
swissprot
ID O22899
description Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1
trembl
ID A0A0B0N1D1
description Uncharacterized protein OS=Gossypium arboreum GN=F383_31148 PE=4 SV=1
Gene Ontology
ID GO:0003676
description probable pre-mrna-splicing factor atp-dependent rna helicase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60433: 63136-68091 , PASA_asmbl_60434: 66224-67369
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008518_050 0.0 - - hypothetical protein F383_31148 [Gossypium arboreum]
2 Hb_028707_090 0.0841836542 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
3 Hb_000504_160 0.0885810006 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
4 Hb_002411_180 0.0900542744 - - PREDICTED: THO complex subunit 1 isoform X1 [Jatropha curcas]
5 Hb_000640_020 0.0948111656 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
6 Hb_001396_290 0.0967073617 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
7 Hb_002411_120 0.098745479 - - PREDICTED: uncharacterized protein LOC105631645 [Jatropha curcas]
8 Hb_004899_030 0.0995077824 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
9 Hb_002477_130 0.0996977337 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000031_290 0.1008934136 - - hypothetical protein POPTR_0006s28540g [Populus trichocarpa]
11 Hb_005892_030 0.1017522346 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
12 Hb_009838_130 0.1021615183 - - hypothetical protein CISIN_1g010403mg [Citrus sinensis]
13 Hb_003581_120 0.102261494 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
14 Hb_000640_320 0.1036628414 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
15 Hb_000025_650 0.1038210966 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
16 Hb_002659_060 0.1050933112 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
17 Hb_009151_020 0.1054027184 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
18 Hb_002960_160 0.1070016006 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
19 Hb_005895_040 0.1075599771 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
20 Hb_004374_150 0.1083596785 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008518_050 Hb_008518_050 Hb_028707_090 Hb_028707_090 Hb_008518_050--Hb_028707_090 Hb_000504_160 Hb_000504_160 Hb_008518_050--Hb_000504_160 Hb_002411_180 Hb_002411_180 Hb_008518_050--Hb_002411_180 Hb_000640_020 Hb_000640_020 Hb_008518_050--Hb_000640_020 Hb_001396_290 Hb_001396_290 Hb_008518_050--Hb_001396_290 Hb_002411_120 Hb_002411_120 Hb_008518_050--Hb_002411_120 Hb_000104_080 Hb_000104_080 Hb_028707_090--Hb_000104_080 Hb_028707_090--Hb_000640_020 Hb_002477_130 Hb_002477_130 Hb_028707_090--Hb_002477_130 Hb_000640_220 Hb_000640_220 Hb_028707_090--Hb_000640_220 Hb_008143_030 Hb_008143_030 Hb_028707_090--Hb_008143_030 Hb_002659_060 Hb_002659_060 Hb_000504_160--Hb_002659_060 Hb_000504_160--Hb_001396_290 Hb_000343_210 Hb_000343_210 Hb_000504_160--Hb_000343_210 Hb_001946_300 Hb_001946_300 Hb_000504_160--Hb_001946_300 Hb_000504_160--Hb_000640_020 Hb_006829_090 Hb_006829_090 Hb_000504_160--Hb_006829_090 Hb_009838_130 Hb_009838_130 Hb_002411_180--Hb_009838_130 Hb_002411_180--Hb_001396_290 Hb_009913_050 Hb_009913_050 Hb_002411_180--Hb_009913_050 Hb_005214_060 Hb_005214_060 Hb_002411_180--Hb_005214_060 Hb_002048_090 Hb_002048_090 Hb_002411_180--Hb_002048_090 Hb_023020_060 Hb_023020_060 Hb_000640_020--Hb_023020_060 Hb_001894_030 Hb_001894_030 Hb_000640_020--Hb_001894_030 Hb_000640_020--Hb_000343_210 Hb_000640_020--Hb_000104_080 Hb_000120_510 Hb_000120_510 Hb_001396_290--Hb_000120_510 Hb_004225_130 Hb_004225_130 Hb_001396_290--Hb_004225_130 Hb_001396_290--Hb_002048_090 Hb_001396_290--Hb_006829_090 Hb_073171_080 Hb_073171_080 Hb_001396_290--Hb_073171_080 Hb_000594_020 Hb_000594_020 Hb_002411_120--Hb_000594_020 Hb_009151_020 Hb_009151_020 Hb_002411_120--Hb_009151_020 Hb_001080_270 Hb_001080_270 Hb_002411_120--Hb_001080_270 Hb_020665_030 Hb_020665_030 Hb_002411_120--Hb_020665_030 Hb_002499_070 Hb_002499_070 Hb_002411_120--Hb_002499_070 Hb_004899_070 Hb_004899_070 Hb_002411_120--Hb_004899_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.1665 36.9905 17.8746 19.9015 67.3259 59.639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.026 20.618 7.54823 13.9601 18.8014

CAGE analysis