Hb_009838_130

Information

Type -
Description -
Location Contig9838: 56809-62862
Sequence    

Annotation

kegg
ID rcu:RCOM_1217310
description 3-isopropylmalate dehydratase, putative (EC:4.2.1.33)
nr
ID KDO40597.1
description hypothetical protein CISIN_1g010403mg [Citrus sinensis]
swissprot
ID Q94AR8
description 3-isopropylmalate dehydratase large subunit OS=Arabidopsis thaliana GN=IIL1 PE=1 SV=1
trembl
ID A0A067DNL3
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010403mg PE=4 SV=1
Gene Ontology
ID GO:0009570
description 3-isopropylmalate dehydratase large subunit-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64526: 56814-62868 , PASA_asmbl_64527: 58586-58863 , PASA_asmbl_64528: 59322-59650
cDNA
(Sanger)
(ID:Location)		 017_K20.ab1: 60950-62868 , 042_I12.ab1: 60923-62868 , 047_H13.ab1: 60893-62868

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009838_130 0.0 - - hypothetical protein CISIN_1g010403mg [Citrus sinensis]
2 Hb_017259_010 0.0713812568 - - -
3 Hb_002411_180 0.0774280244 - - PREDICTED: THO complex subunit 1 isoform X1 [Jatropha curcas]
4 Hb_008518_050 0.1021615183 - - hypothetical protein F383_31148 [Gossypium arboreum]
5 Hb_004374_150 0.1055548733 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]
6 Hb_000529_080 0.1080761574 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
7 Hb_007643_050 0.1083381284 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000211_110 0.1098365333 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
9 Hb_023020_060 0.1111221187 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
10 Hb_000186_260 0.1119027343 transcription factor TF Family: PHD PREDICTED: protein polybromo-1-like [Jatropha curcas]
11 Hb_004109_060 0.1125738769 - - hypothetical protein POPTR_0019s12520g [Populus trichocarpa]
12 Hb_009913_050 0.1139739493 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
13 Hb_001616_090 0.1146343087 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
14 Hb_089889_020 0.1151554669 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At2g36080-like [Jatropha curcas]
15 Hb_001357_380 0.1154381428 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_031091_010 0.1157063651 - - crooked neck protein, putative [Ricinus communis]
17 Hb_001894_030 0.1164618658 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
18 Hb_001396_290 0.1168480344 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
19 Hb_004450_060 0.1190995079 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
20 Hb_000640_020 0.1198291218 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]

Gene co-expression network

sample Hb_009838_130 Hb_009838_130 Hb_017259_010 Hb_017259_010 Hb_009838_130--Hb_017259_010 Hb_002411_180 Hb_002411_180 Hb_009838_130--Hb_002411_180 Hb_008518_050 Hb_008518_050 Hb_009838_130--Hb_008518_050 Hb_004374_150 Hb_004374_150 Hb_009838_130--Hb_004374_150 Hb_000529_080 Hb_000529_080 Hb_009838_130--Hb_000529_080 Hb_007643_050 Hb_007643_050 Hb_009838_130--Hb_007643_050 Hb_001158_220 Hb_001158_220 Hb_017259_010--Hb_001158_220 Hb_017259_010--Hb_007643_050 Hb_025236_040 Hb_025236_040 Hb_017259_010--Hb_025236_040 Hb_004447_030 Hb_004447_030 Hb_017259_010--Hb_004447_030 Hb_017259_010--Hb_000529_080 Hb_001396_290 Hb_001396_290 Hb_002411_180--Hb_001396_290 Hb_002411_180--Hb_008518_050 Hb_009913_050 Hb_009913_050 Hb_002411_180--Hb_009913_050 Hb_005214_060 Hb_005214_060 Hb_002411_180--Hb_005214_060 Hb_002048_090 Hb_002048_090 Hb_002411_180--Hb_002048_090 Hb_028707_090 Hb_028707_090 Hb_008518_050--Hb_028707_090 Hb_000504_160 Hb_000504_160 Hb_008518_050--Hb_000504_160 Hb_000640_020 Hb_000640_020 Hb_008518_050--Hb_000640_020 Hb_008518_050--Hb_001396_290 Hb_002411_120 Hb_002411_120 Hb_008518_050--Hb_002411_120 Hb_004701_030 Hb_004701_030 Hb_004374_150--Hb_004701_030 Hb_073171_080 Hb_073171_080 Hb_004374_150--Hb_073171_080 Hb_023020_060 Hb_023020_060 Hb_004374_150--Hb_023020_060 Hb_004374_150--Hb_001396_290 Hb_023001_020 Hb_023001_020 Hb_004374_150--Hb_023001_020 Hb_001474_030 Hb_001474_030 Hb_004374_150--Hb_001474_030 Hb_000205_120 Hb_000205_120 Hb_000529_080--Hb_000205_120 Hb_000058_040 Hb_000058_040 Hb_000529_080--Hb_000058_040 Hb_000265_150 Hb_000265_150 Hb_000529_080--Hb_000265_150 Hb_008887_050 Hb_008887_050 Hb_000529_080--Hb_008887_050 Hb_000976_270 Hb_000976_270 Hb_000529_080--Hb_000976_270 Hb_031939_010 Hb_031939_010 Hb_000529_080--Hb_031939_010 Hb_002475_160 Hb_002475_160 Hb_007643_050--Hb_002475_160 Hb_011942_080 Hb_011942_080 Hb_007643_050--Hb_011942_080 Hb_001616_090 Hb_001616_090 Hb_007643_050--Hb_001616_090 Hb_000116_110 Hb_000116_110 Hb_007643_050--Hb_000116_110 Hb_031091_010 Hb_031091_010 Hb_007643_050--Hb_031091_010 Hb_007643_050--Hb_001158_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
209.368 106.721 69.6068 62.8257 192.146 195.803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
131.652 81.8396 16.7106 39.4305 20.7335

CAGE analysis