Hb_001616_090

Information

Type -
Description -
Location Contig1616: 126832-129689
Sequence    

Annotation

kegg
ID rcu:RCOM_1750200
description RING finger protein, putative
nr
ID XP_012085071.1
description PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
swissprot
ID P19474
description E3 ubiquitin-protein ligase TRIM21 OS=Homo sapiens GN=TRIM21 PE=1 SV=1
trembl
ID A0A067K272
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17518 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase rnf4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14497: 126891-129628 , PASA_asmbl_14498: 127407-129628
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001616_090 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
2 Hb_000186_280 0.0648687083 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
3 Hb_009411_020 0.0651057424 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
4 Hb_031091_010 0.0651454564 - - crooked neck protein, putative [Ricinus communis]
5 Hb_007643_050 0.071079437 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000684_420 0.0744186682 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
7 Hb_173178_020 0.0775643592 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
8 Hb_004678_060 0.0782566668 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
9 Hb_001969_040 0.0790719959 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
10 Hb_073171_080 0.0803537004 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
11 Hb_023020_060 0.0805341628 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
12 Hb_005701_040 0.081321777 - - cellular nucleic acid binding protein, putative [Ricinus communis]
13 Hb_024990_010 0.0818958948 - - PREDICTED: la protein 1 [Jatropha curcas]
14 Hb_011942_080 0.0820069011 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
15 Hb_000645_150 0.0820738288 - - zinc finger protein, putative [Ricinus communis]
16 Hb_012305_070 0.0831122969 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002400_180 0.0840085257 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010298_020 0.0842630901 - - PREDICTED: uncharacterized protein At2g02148 isoform X4 [Vitis vinifera]
19 Hb_000076_080 0.085696514 - - PREDICTED: protein MOS2 [Jatropha curcas]
20 Hb_006913_040 0.086358434 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_001616_090 Hb_001616_090 Hb_000186_280 Hb_000186_280 Hb_001616_090--Hb_000186_280 Hb_009411_020 Hb_009411_020 Hb_001616_090--Hb_009411_020 Hb_031091_010 Hb_031091_010 Hb_001616_090--Hb_031091_010 Hb_007643_050 Hb_007643_050 Hb_001616_090--Hb_007643_050 Hb_000684_420 Hb_000684_420 Hb_001616_090--Hb_000684_420 Hb_173178_020 Hb_173178_020 Hb_001616_090--Hb_173178_020 Hb_000186_280--Hb_000684_420 Hb_001969_040 Hb_001969_040 Hb_000186_280--Hb_001969_040 Hb_002400_180 Hb_002400_180 Hb_000186_280--Hb_002400_180 Hb_000076_080 Hb_000076_080 Hb_000186_280--Hb_000076_080 Hb_000645_150 Hb_000645_150 Hb_000186_280--Hb_000645_150 Hb_012305_070 Hb_012305_070 Hb_000186_280--Hb_012305_070 Hb_000156_140 Hb_000156_140 Hb_009411_020--Hb_000156_140 Hb_002774_070 Hb_002774_070 Hb_009411_020--Hb_002774_070 Hb_024714_020 Hb_024714_020 Hb_009411_020--Hb_024714_020 Hb_009411_020--Hb_001969_040 Hb_009411_020--Hb_000186_280 Hb_008695_120 Hb_008695_120 Hb_031091_010--Hb_008695_120 Hb_002716_140 Hb_002716_140 Hb_031091_010--Hb_002716_140 Hb_000322_100 Hb_000322_100 Hb_031091_010--Hb_000322_100 Hb_003581_120 Hb_003581_120 Hb_031091_010--Hb_003581_120 Hb_031091_010--Hb_007643_050 Hb_002475_160 Hb_002475_160 Hb_007643_050--Hb_002475_160 Hb_011942_080 Hb_011942_080 Hb_007643_050--Hb_011942_080 Hb_000116_110 Hb_000116_110 Hb_007643_050--Hb_000116_110 Hb_001158_220 Hb_001158_220 Hb_007643_050--Hb_001158_220 Hb_000684_420--Hb_000076_080 Hb_002097_090 Hb_002097_090 Hb_000684_420--Hb_002097_090 Hb_000684_420--Hb_002400_180 Hb_004724_360 Hb_004724_360 Hb_000684_420--Hb_004724_360 Hb_073171_080 Hb_073171_080 Hb_000684_420--Hb_073171_080 Hb_173178_020--Hb_031091_010 Hb_003716_020 Hb_003716_020 Hb_173178_020--Hb_003716_020 Hb_000352_090 Hb_000352_090 Hb_173178_020--Hb_000352_090 Hb_173178_020--Hb_009411_020 Hb_008714_020 Hb_008714_020 Hb_173178_020--Hb_008714_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
179.782 77.7952 54.6608 42.1137 154.658 211.979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.3019 77.3436 52.233 47.5206 19.9071

CAGE analysis