Hb_173178_020

Information

Type -
Description -
Location Contig173178: 1550-2111
Sequence    

Annotation

kegg
ID pop:POPTR_0008s09050g
description POPTRDRAFT_564252; hypothetical protein
nr
ID XP_012067702.1
description PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
swissprot
ID Q9SEL5
description Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3
trembl
ID A0A067KYN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15649 PE=4 SV=1
Gene Ontology
ID GO:0005770
description vesicle transport v-snare 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 027_P14.ab1: 1434-3023

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_173178_020 0.0 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
2 Hb_001616_090 0.0775643592 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
3 Hb_031091_010 0.0845221507 - - crooked neck protein, putative [Ricinus communis]
4 Hb_003716_020 0.0977294298 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
5 Hb_000352_090 0.0990142832 - - PREDICTED: syntaxin-22-like isoform X1 [Jatropha curcas]
6 Hb_009411_020 0.1011570353 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
7 Hb_008714_020 0.1018685112 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
8 Hb_003995_010 0.1052212823 - - -
9 Hb_023020_060 0.1080588477 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
10 Hb_175612_010 0.1081101783 transcription factor TF Family: MBF1 orf [Ricinus communis]
11 Hb_002774_070 0.1086677455 - - hypothetical protein EUGRSUZ_F00307 [Eucalyptus grandis]
12 Hb_001910_020 0.1089540651 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
13 Hb_023001_050 0.1093834572 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
14 Hb_000322_100 0.1117704316 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
15 Hb_006913_040 0.1122204388 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
16 Hb_000866_030 0.1123575857 - - hypothetical protein RCOM_1615820 [Ricinus communis]
17 Hb_027028_020 0.1131326971 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
18 Hb_001894_030 0.1140653661 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
19 Hb_001052_040 0.1151688057 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
20 Hb_001019_170 0.1154364383 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]

Gene co-expression network

sample Hb_173178_020 Hb_173178_020 Hb_001616_090 Hb_001616_090 Hb_173178_020--Hb_001616_090 Hb_031091_010 Hb_031091_010 Hb_173178_020--Hb_031091_010 Hb_003716_020 Hb_003716_020 Hb_173178_020--Hb_003716_020 Hb_000352_090 Hb_000352_090 Hb_173178_020--Hb_000352_090 Hb_009411_020 Hb_009411_020 Hb_173178_020--Hb_009411_020 Hb_008714_020 Hb_008714_020 Hb_173178_020--Hb_008714_020 Hb_000186_280 Hb_000186_280 Hb_001616_090--Hb_000186_280 Hb_001616_090--Hb_009411_020 Hb_001616_090--Hb_031091_010 Hb_007643_050 Hb_007643_050 Hb_001616_090--Hb_007643_050 Hb_000684_420 Hb_000684_420 Hb_001616_090--Hb_000684_420 Hb_008695_120 Hb_008695_120 Hb_031091_010--Hb_008695_120 Hb_002716_140 Hb_002716_140 Hb_031091_010--Hb_002716_140 Hb_000322_100 Hb_000322_100 Hb_031091_010--Hb_000322_100 Hb_003581_120 Hb_003581_120 Hb_031091_010--Hb_003581_120 Hb_031091_010--Hb_007643_050 Hb_011497_010 Hb_011497_010 Hb_003716_020--Hb_011497_010 Hb_007668_020 Hb_007668_020 Hb_003716_020--Hb_007668_020 Hb_003581_020 Hb_003581_020 Hb_003716_020--Hb_003581_020 Hb_005000_270 Hb_005000_270 Hb_003716_020--Hb_005000_270 Hb_000849_100 Hb_000849_100 Hb_003716_020--Hb_000849_100 Hb_006002_030 Hb_006002_030 Hb_003716_020--Hb_006002_030 Hb_000521_260 Hb_000521_260 Hb_000352_090--Hb_000521_260 Hb_001829_010 Hb_001829_010 Hb_000352_090--Hb_001829_010 Hb_005307_030 Hb_005307_030 Hb_000352_090--Hb_005307_030 Hb_000352_090--Hb_031091_010 Hb_000352_090--Hb_008714_020 Hb_011612_010 Hb_011612_010 Hb_000352_090--Hb_011612_010 Hb_000156_140 Hb_000156_140 Hb_009411_020--Hb_000156_140 Hb_002774_070 Hb_002774_070 Hb_009411_020--Hb_002774_070 Hb_024714_020 Hb_024714_020 Hb_009411_020--Hb_024714_020 Hb_001969_040 Hb_001969_040 Hb_009411_020--Hb_001969_040 Hb_009411_020--Hb_000186_280 Hb_001019_170 Hb_001019_170 Hb_008714_020--Hb_001019_170 Hb_010180_040 Hb_010180_040 Hb_008714_020--Hb_010180_040 Hb_001040_160 Hb_001040_160 Hb_008714_020--Hb_001040_160 Hb_027028_020 Hb_027028_020 Hb_008714_020--Hb_027028_020 Hb_000699_250 Hb_000699_250 Hb_008714_020--Hb_000699_250 Hb_000046_450 Hb_000046_450 Hb_008714_020--Hb_000046_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
246.628 119.245 73.3624 110.133 204.125 325.86
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
110.132 93.0699 71.1072 65.4011 15.2579

CAGE analysis