Hb_005307_030

Information

Type -
Description -
Location Contig5307: 85998-86867
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04640g
description POPTRDRAFT_652681; hypothetical protein
nr
ID XP_006381003.1
description hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G5V4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04640g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005307_030 0.0 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
2 Hb_010710_110 0.0776827399 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
3 Hb_002027_260 0.0809507842 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
4 Hb_001141_330 0.081818903 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
5 Hb_000953_010 0.0834507845 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
6 Hb_004324_280 0.0852466762 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
7 Hb_000803_190 0.0872768845 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
8 Hb_156850_030 0.0877587026 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
9 Hb_000009_550 0.0877674303 - - hypothetical protein RCOM_0603640 [Ricinus communis]
10 Hb_004734_060 0.088764493 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
11 Hb_000787_110 0.0925256883 - - eukaryotic translation initiation factor 2 [Hevea brasiliensis]
12 Hb_000352_090 0.0935534005 - - PREDICTED: syntaxin-22-like isoform X1 [Jatropha curcas]
13 Hb_000836_360 0.0940578121 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
14 Hb_000977_070 0.0949961547 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
15 Hb_002154_030 0.0954124965 - - RNA binding protein, putative [Ricinus communis]
16 Hb_004934_090 0.0955757626 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
17 Hb_000162_090 0.0960275495 - - PREDICTED: methyltransferase-like protein 16 isoform X1 [Jatropha curcas]
18 Hb_004204_080 0.0962957252 - - diacylglycerol kinase, theta, putative [Ricinus communis]
19 Hb_000923_020 0.0964061115 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
20 Hb_001728_100 0.096441129 - - hypothetical protein JCGZ_03429 [Jatropha curcas]

Gene co-expression network

sample Hb_005307_030 Hb_005307_030 Hb_010710_110 Hb_010710_110 Hb_005307_030--Hb_010710_110 Hb_002027_260 Hb_002027_260 Hb_005307_030--Hb_002027_260 Hb_001141_330 Hb_001141_330 Hb_005307_030--Hb_001141_330 Hb_000953_010 Hb_000953_010 Hb_005307_030--Hb_000953_010 Hb_004324_280 Hb_004324_280 Hb_005307_030--Hb_004324_280 Hb_000803_190 Hb_000803_190 Hb_005307_030--Hb_000803_190 Hb_000009_550 Hb_000009_550 Hb_010710_110--Hb_000009_550 Hb_000787_110 Hb_000787_110 Hb_010710_110--Hb_000787_110 Hb_004934_090 Hb_004934_090 Hb_010710_110--Hb_004934_090 Hb_000923_020 Hb_000923_020 Hb_010710_110--Hb_000923_020 Hb_001720_050 Hb_001720_050 Hb_010710_110--Hb_001720_050 Hb_006400_040 Hb_006400_040 Hb_002027_260--Hb_006400_040 Hb_012634_010 Hb_012634_010 Hb_002027_260--Hb_012634_010 Hb_001623_420 Hb_001623_420 Hb_002027_260--Hb_001623_420 Hb_001728_100 Hb_001728_100 Hb_002027_260--Hb_001728_100 Hb_000236_100 Hb_000236_100 Hb_002027_260--Hb_000236_100 Hb_002375_020 Hb_002375_020 Hb_002027_260--Hb_002375_020 Hb_002026_110 Hb_002026_110 Hb_001141_330--Hb_002026_110 Hb_000977_070 Hb_000977_070 Hb_001141_330--Hb_000977_070 Hb_001141_330--Hb_004324_280 Hb_001141_330--Hb_000236_100 Hb_000340_510 Hb_000340_510 Hb_001141_330--Hb_000340_510 Hb_000953_010--Hb_000803_190 Hb_004734_060 Hb_004734_060 Hb_000953_010--Hb_004734_060 Hb_000836_360 Hb_000836_360 Hb_000953_010--Hb_000836_360 Hb_000173_400 Hb_000173_400 Hb_000953_010--Hb_000173_400 Hb_033152_080 Hb_033152_080 Hb_000953_010--Hb_033152_080 Hb_156850_030 Hb_156850_030 Hb_000953_010--Hb_156850_030 Hb_000186_280 Hb_000186_280 Hb_004324_280--Hb_000186_280 Hb_001969_040 Hb_001969_040 Hb_004324_280--Hb_001969_040 Hb_002818_040 Hb_002818_040 Hb_004324_280--Hb_002818_040 Hb_004324_280--Hb_000340_510 Hb_000462_150 Hb_000462_150 Hb_004324_280--Hb_000462_150 Hb_000803_190--Hb_004734_060 Hb_000803_190--Hb_033152_080 Hb_001797_050 Hb_001797_050 Hb_000803_190--Hb_001797_050 Hb_005188_050 Hb_005188_050 Hb_000803_190--Hb_005188_050 Hb_000207_390 Hb_000207_390 Hb_000803_190--Hb_000207_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.8807 31.769 8.41638 12.185 37.0781 51.4884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.4412 30.1289 30.3458 10.7919 7.34675

CAGE analysis