Hb_009411_020

Information

Type -
Description -
Location Contig9411: 42767-46646
Sequence    

Annotation

kegg
ID brp:103841636
description eukaryotic translation initiation factor 3 subunit E
nr
ID XP_011048096.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
swissprot
ID A7RWP6
description Eukaryotic translation initiation factor 3 subunit E OS=Nematostella vectensis GN=v1g163572 PE=3 SV=1
trembl
ID A0A078DJV8
description Eukaryotic translation initiation factor 3 subunit E OS=Brassica napus GN=BnaA04g02470D PE=3 SV=1
Gene Ontology
ID GO:0005829
description eukaryotic translation initiation factor 3 subunit e-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63191: 42768-46606
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009411_020 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
2 Hb_000156_140 0.0578280202 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
3 Hb_001616_090 0.0651057424 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
4 Hb_002774_070 0.0673402281 - - hypothetical protein EUGRSUZ_F00307 [Eucalyptus grandis]
5 Hb_024714_020 0.067619439 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_001969_040 0.074563216 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
7 Hb_000186_280 0.0747064937 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
8 Hb_004324_280 0.0789793879 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
9 Hb_000175_390 0.0789989481 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
10 Hb_000462_150 0.0808676319 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
11 Hb_000684_420 0.0829534782 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
12 Hb_005237_060 0.0831001694 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
13 Hb_004204_200 0.0837269233 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
14 Hb_109842_010 0.0852863747 - - PREDICTED: uncharacterized protein LOC105647554 isoform X2 [Jatropha curcas]
15 Hb_005701_040 0.0889875614 - - cellular nucleic acid binding protein, putative [Ricinus communis]
16 Hb_003384_030 0.0891398155 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
17 Hb_000076_080 0.0913606752 - - PREDICTED: protein MOS2 [Jatropha curcas]
18 Hb_001663_110 0.0937802255 - - RNA binding protein, putative [Ricinus communis]
19 Hb_004044_020 0.0939595792 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
20 Hb_000749_150 0.0939830309 - - -

Gene co-expression network

sample Hb_009411_020 Hb_009411_020 Hb_000156_140 Hb_000156_140 Hb_009411_020--Hb_000156_140 Hb_001616_090 Hb_001616_090 Hb_009411_020--Hb_001616_090 Hb_002774_070 Hb_002774_070 Hb_009411_020--Hb_002774_070 Hb_024714_020 Hb_024714_020 Hb_009411_020--Hb_024714_020 Hb_001969_040 Hb_001969_040 Hb_009411_020--Hb_001969_040 Hb_000186_280 Hb_000186_280 Hb_009411_020--Hb_000186_280 Hb_000156_140--Hb_002774_070 Hb_000165_030 Hb_000165_030 Hb_000156_140--Hb_000165_030 Hb_000175_390 Hb_000175_390 Hb_000156_140--Hb_000175_390 Hb_004204_200 Hb_004204_200 Hb_000156_140--Hb_004204_200 Hb_000997_020 Hb_000997_020 Hb_000156_140--Hb_000997_020 Hb_001616_090--Hb_000186_280 Hb_031091_010 Hb_031091_010 Hb_001616_090--Hb_031091_010 Hb_007643_050 Hb_007643_050 Hb_001616_090--Hb_007643_050 Hb_000684_420 Hb_000684_420 Hb_001616_090--Hb_000684_420 Hb_173178_020 Hb_173178_020 Hb_001616_090--Hb_173178_020 Hb_005432_010 Hb_005432_010 Hb_002774_070--Hb_005432_010 Hb_033312_140 Hb_033312_140 Hb_002774_070--Hb_033312_140 Hb_002475_050 Hb_002475_050 Hb_002774_070--Hb_002475_050 Hb_000749_150 Hb_000749_150 Hb_002774_070--Hb_000749_150 Hb_010222_030 Hb_010222_030 Hb_024714_020--Hb_010222_030 Hb_000462_150 Hb_000462_150 Hb_024714_020--Hb_000462_150 Hb_003006_060 Hb_003006_060 Hb_024714_020--Hb_003006_060 Hb_185467_010 Hb_185467_010 Hb_024714_020--Hb_185467_010 Hb_000230_330 Hb_000230_330 Hb_024714_020--Hb_000230_330 Hb_001969_040--Hb_000462_150 Hb_001969_040--Hb_000186_280 Hb_003384_030 Hb_003384_030 Hb_001969_040--Hb_003384_030 Hb_018663_020 Hb_018663_020 Hb_001969_040--Hb_018663_020 Hb_004324_280 Hb_004324_280 Hb_001969_040--Hb_004324_280 Hb_002818_040 Hb_002818_040 Hb_001969_040--Hb_002818_040 Hb_000186_280--Hb_000684_420 Hb_002400_180 Hb_002400_180 Hb_000186_280--Hb_002400_180 Hb_000076_080 Hb_000076_080 Hb_000186_280--Hb_000076_080 Hb_000645_150 Hb_000645_150 Hb_000186_280--Hb_000645_150 Hb_012305_070 Hb_012305_070 Hb_000186_280--Hb_012305_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
125.656 40.1576 36.3778 30.521 105.177 155.51
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.6827 58.8594 54.1208 24.0087 14.9909

CAGE analysis