Hb_000352_090

Information

Type -
Description -
Location Contig352: 93913-100865
Sequence    

Annotation

kegg
ID pvu:PHAVU_001G099300g
description hypothetical protein
nr
ID XP_012067394.1
description PREDICTED: syntaxin-22-like isoform X1 [Jatropha curcas]
swissprot
ID P93654
description Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1
trembl
ID A0A067LCQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26902 PE=4 SV=1
Gene Ontology
ID GO:0016020
description syntaxin-22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36553: 94046-100784
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_090 0.0 - - PREDICTED: syntaxin-22-like isoform X1 [Jatropha curcas]
2 Hb_000521_260 0.0886072796 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
3 Hb_001829_010 0.0911767126 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
4 Hb_005307_030 0.0935534005 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
5 Hb_031091_010 0.0948388964 - - crooked neck protein, putative [Ricinus communis]
6 Hb_008714_020 0.0958084335 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
7 Hb_011612_010 0.097401537 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
8 Hb_173178_020 0.0990142832 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
9 Hb_000224_060 0.0997953591 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
10 Hb_000291_190 0.1006776035 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
11 Hb_001019_170 0.1025987945 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
12 Hb_002601_120 0.1030294015 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
13 Hb_000521_020 0.1034966589 - - PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]
14 Hb_001584_170 0.105286111 - - neutral/alkaline invertase [Manihot esculenta]
15 Hb_000861_070 0.1056448956 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012193_010 0.1069098967 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_000270_780 0.1077122363 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]
18 Hb_002133_030 0.1081417355 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
19 Hb_004162_280 0.1082834881 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
20 Hb_004734_060 0.1085932067 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000352_090 Hb_000352_090 Hb_000521_260 Hb_000521_260 Hb_000352_090--Hb_000521_260 Hb_001829_010 Hb_001829_010 Hb_000352_090--Hb_001829_010 Hb_005307_030 Hb_005307_030 Hb_000352_090--Hb_005307_030 Hb_031091_010 Hb_031091_010 Hb_000352_090--Hb_031091_010 Hb_008714_020 Hb_008714_020 Hb_000352_090--Hb_008714_020 Hb_011612_010 Hb_011612_010 Hb_000352_090--Hb_011612_010 Hb_075481_030 Hb_075481_030 Hb_000521_260--Hb_075481_030 Hb_000768_110 Hb_000768_110 Hb_000521_260--Hb_000768_110 Hb_006586_050 Hb_006586_050 Hb_000521_260--Hb_006586_050 Hb_000510_310 Hb_000510_310 Hb_000521_260--Hb_000510_310 Hb_008511_030 Hb_008511_030 Hb_000521_260--Hb_008511_030 Hb_000976_320 Hb_000976_320 Hb_000521_260--Hb_000976_320 Hb_000684_420 Hb_000684_420 Hb_001829_010--Hb_000684_420 Hb_006913_040 Hb_006913_040 Hb_001829_010--Hb_006913_040 Hb_002097_090 Hb_002097_090 Hb_001829_010--Hb_002097_090 Hb_000645_150 Hb_000645_150 Hb_001829_010--Hb_000645_150 Hb_001019_170 Hb_001019_170 Hb_001829_010--Hb_001019_170 Hb_000076_080 Hb_000076_080 Hb_001829_010--Hb_000076_080 Hb_010710_110 Hb_010710_110 Hb_005307_030--Hb_010710_110 Hb_002027_260 Hb_002027_260 Hb_005307_030--Hb_002027_260 Hb_001141_330 Hb_001141_330 Hb_005307_030--Hb_001141_330 Hb_000953_010 Hb_000953_010 Hb_005307_030--Hb_000953_010 Hb_004324_280 Hb_004324_280 Hb_005307_030--Hb_004324_280 Hb_000803_190 Hb_000803_190 Hb_005307_030--Hb_000803_190 Hb_008695_120 Hb_008695_120 Hb_031091_010--Hb_008695_120 Hb_001616_090 Hb_001616_090 Hb_031091_010--Hb_001616_090 Hb_002716_140 Hb_002716_140 Hb_031091_010--Hb_002716_140 Hb_000322_100 Hb_000322_100 Hb_031091_010--Hb_000322_100 Hb_003581_120 Hb_003581_120 Hb_031091_010--Hb_003581_120 Hb_007643_050 Hb_007643_050 Hb_031091_010--Hb_007643_050 Hb_008714_020--Hb_001019_170 Hb_010180_040 Hb_010180_040 Hb_008714_020--Hb_010180_040 Hb_001040_160 Hb_001040_160 Hb_008714_020--Hb_001040_160 Hb_027028_020 Hb_027028_020 Hb_008714_020--Hb_027028_020 Hb_000699_250 Hb_000699_250 Hb_008714_020--Hb_000699_250 Hb_000046_450 Hb_000046_450 Hb_008714_020--Hb_000046_450 Hb_002701_080 Hb_002701_080 Hb_011612_010--Hb_002701_080 Hb_000398_190 Hb_000398_190 Hb_011612_010--Hb_000398_190 Hb_001504_160 Hb_001504_160 Hb_011612_010--Hb_001504_160 Hb_012654_010 Hb_012654_010 Hb_011612_010--Hb_012654_010 Hb_012193_010 Hb_012193_010 Hb_011612_010--Hb_012193_010 Hb_004162_280 Hb_004162_280 Hb_011612_010--Hb_004162_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.5893 46.1668 12.2615 24.5896 58.8823 75.1648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.7273 32.9965 29.6748 19.4973 4.94169

CAGE analysis