Hb_012193_010

Information

Type -
Description -
Location Contig12193: 4232-15839
Sequence    

Annotation

kegg
ID rcu:RCOM_0742410
description nucleic acid binding protein, putative (EC:3.1.2.15)
nr
ID XP_002525522.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q9FNZ2
description Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1
trembl
ID B9SHQ3
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0742410 PE=4 SV=1
Gene Ontology
ID GO:0003723
description far upstream element-binding protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012193_010 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_000057_040 0.0811908486 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_001047_100 0.0817206522 - - 40S ribosomal protein S18, putative [Ricinus communis]
4 Hb_000099_240 0.0874193747 - - 60S ribosomal protein L7a, putative [Ricinus communis]
5 Hb_004198_010 0.0889673896 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
6 Hb_105386_010 0.0894466354 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
7 Hb_011612_010 0.0900441386 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
8 Hb_000976_320 0.0909720982 - - UPF0061 protein azo1574 [Morus notabilis]
9 Hb_000236_370 0.095317193 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
10 Hb_000008_330 0.096009927 - - 60S ribosomal protein L12A [Hevea brasiliensis]
11 Hb_003746_040 0.0961393146 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
12 Hb_023001_050 0.0962769121 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
13 Hb_002701_080 0.0966593156 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Jatropha curcas]
14 Hb_002609_110 0.0977708626 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
15 Hb_143629_010 0.0982719741 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
16 Hb_168707_030 0.0984442914 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
17 Hb_000861_070 0.0996558539 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004204_200 0.0996653485 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
19 Hb_000290_020 0.0998365762 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
20 Hb_004044_020 0.1004225699 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_012193_010 Hb_012193_010 Hb_000057_040 Hb_000057_040 Hb_012193_010--Hb_000057_040 Hb_001047_100 Hb_001047_100 Hb_012193_010--Hb_001047_100 Hb_000099_240 Hb_000099_240 Hb_012193_010--Hb_000099_240 Hb_004198_010 Hb_004198_010 Hb_012193_010--Hb_004198_010 Hb_105386_010 Hb_105386_010 Hb_012193_010--Hb_105386_010 Hb_011612_010 Hb_011612_010 Hb_012193_010--Hb_011612_010 Hb_002609_110 Hb_002609_110 Hb_000057_040--Hb_002609_110 Hb_168707_030 Hb_168707_030 Hb_000057_040--Hb_168707_030 Hb_168000_010 Hb_168000_010 Hb_000057_040--Hb_168000_010 Hb_003642_060 Hb_003642_060 Hb_000057_040--Hb_003642_060 Hb_004195_160 Hb_004195_160 Hb_000057_040--Hb_004195_160 Hb_001252_080 Hb_001252_080 Hb_000057_040--Hb_001252_080 Hb_001047_100--Hb_105386_010 Hb_003746_040 Hb_003746_040 Hb_001047_100--Hb_003746_040 Hb_000189_340 Hb_000189_340 Hb_001047_100--Hb_000189_340 Hb_000290_020 Hb_000290_020 Hb_001047_100--Hb_000290_020 Hb_001358_030 Hb_001358_030 Hb_001047_100--Hb_001358_030 Hb_001766_150 Hb_001766_150 Hb_001047_100--Hb_001766_150 Hb_007590_010 Hb_007590_010 Hb_000099_240--Hb_007590_010 Hb_000923_020 Hb_000923_020 Hb_000099_240--Hb_000923_020 Hb_004223_090 Hb_004223_090 Hb_000099_240--Hb_004223_090 Hb_000099_240--Hb_001358_030 Hb_003777_270 Hb_003777_270 Hb_000099_240--Hb_003777_270 Hb_001677_210 Hb_001677_210 Hb_000099_240--Hb_001677_210 Hb_000956_030 Hb_000956_030 Hb_004198_010--Hb_000956_030 Hb_003434_060 Hb_003434_060 Hb_004198_010--Hb_003434_060 Hb_000364_060 Hb_000364_060 Hb_004198_010--Hb_000364_060 Hb_000120_500 Hb_000120_500 Hb_004198_010--Hb_000120_500 Hb_004450_010 Hb_004450_010 Hb_004198_010--Hb_004450_010 Hb_003044_100 Hb_003044_100 Hb_004198_010--Hb_003044_100 Hb_105386_010--Hb_001358_030 Hb_105386_010--Hb_000189_340 Hb_000349_060 Hb_000349_060 Hb_105386_010--Hb_000349_060 Hb_023001_050 Hb_023001_050 Hb_105386_010--Hb_023001_050 Hb_105386_010--Hb_003746_040 Hb_002701_080 Hb_002701_080 Hb_011612_010--Hb_002701_080 Hb_000398_190 Hb_000398_190 Hb_011612_010--Hb_000398_190 Hb_001504_160 Hb_001504_160 Hb_011612_010--Hb_001504_160 Hb_012654_010 Hb_012654_010 Hb_011612_010--Hb_012654_010 Hb_004162_280 Hb_004162_280 Hb_011612_010--Hb_004162_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.7958 14.705 10.6939 14.4327 42.7107 42.7044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2362 28.9873 19.4185 14.5881 3.45714

CAGE analysis