Hb_000116_110

Information

Type -
Description -
Location Contig116: 106236-116173
Sequence    

Annotation

kegg
ID pop:POPTR_0005s10350g
description POPTRDRAFT_558773; phosphoinositide phosphatase family protein
nr
ID XP_012065379.1
description PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
swissprot
ID Q7X911
description Phosphoinositide phosphatase SAC6 OS=Arabidopsis thaliana GN=SAC6 PE=2 SV=1
trembl
ID A0A067L979
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22385 PE=4 SV=1
Gene Ontology
ID GO:0004439
description phosphoinositide phosphatase sac6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04815: 106238-116123 , PASA_asmbl_04816: 108520-109664 , PASA_asmbl_04817: 113136-113244
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_110 0.0 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
2 Hb_007643_050 0.0725387812 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_012305_070 0.0766145833 - - conserved hypothetical protein [Ricinus communis]
4 Hb_015941_030 0.0776881825 - - unknown [Populus trichocarpa]
5 Hb_002475_160 0.0815831083 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
6 Hb_000236_370 0.0856833252 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
7 Hb_000265_150 0.0875181281 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
8 Hb_012799_110 0.0887085998 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
9 Hb_000808_040 0.0890208154 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
10 Hb_031091_010 0.0891433497 - - crooked neck protein, putative [Ricinus communis]
11 Hb_001616_090 0.0913805472 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
12 Hb_010298_020 0.0924167071 - - PREDICTED: uncharacterized protein At2g02148 isoform X4 [Vitis vinifera]
13 Hb_005701_040 0.0937363836 - - cellular nucleic acid binding protein, putative [Ricinus communis]
14 Hb_008725_250 0.0937806709 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_000645_150 0.094475366 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000186_280 0.0951976394 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
17 Hb_005489_130 0.0954757088 - - calmodulin, putative [Ricinus communis]
18 Hb_001829_010 0.0958228151 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
19 Hb_000905_190 0.0972984294 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
20 Hb_001158_220 0.0985034655 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]

Gene co-expression network

sample Hb_000116_110 Hb_000116_110 Hb_007643_050 Hb_007643_050 Hb_000116_110--Hb_007643_050 Hb_012305_070 Hb_012305_070 Hb_000116_110--Hb_012305_070 Hb_015941_030 Hb_015941_030 Hb_000116_110--Hb_015941_030 Hb_002475_160 Hb_002475_160 Hb_000116_110--Hb_002475_160 Hb_000236_370 Hb_000236_370 Hb_000116_110--Hb_000236_370 Hb_000265_150 Hb_000265_150 Hb_000116_110--Hb_000265_150 Hb_007643_050--Hb_002475_160 Hb_011942_080 Hb_011942_080 Hb_007643_050--Hb_011942_080 Hb_001616_090 Hb_001616_090 Hb_007643_050--Hb_001616_090 Hb_031091_010 Hb_031091_010 Hb_007643_050--Hb_031091_010 Hb_001158_220 Hb_001158_220 Hb_007643_050--Hb_001158_220 Hb_000684_420 Hb_000684_420 Hb_012305_070--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_012305_070--Hb_000645_150 Hb_000186_280 Hb_000186_280 Hb_012305_070--Hb_000186_280 Hb_001014_010 Hb_001014_010 Hb_012305_070--Hb_001014_010 Hb_012305_070--Hb_000236_370 Hb_003384_030 Hb_003384_030 Hb_012305_070--Hb_003384_030 Hb_029584_080 Hb_029584_080 Hb_015941_030--Hb_029584_080 Hb_000808_040 Hb_000808_040 Hb_015941_030--Hb_000808_040 Hb_002232_170 Hb_002232_170 Hb_015941_030--Hb_002232_170 Hb_008406_160 Hb_008406_160 Hb_015941_030--Hb_008406_160 Hb_015941_030--Hb_002475_160 Hb_007336_020 Hb_007336_020 Hb_002475_160--Hb_007336_020 Hb_007590_080 Hb_007590_080 Hb_002475_160--Hb_007590_080 Hb_002475_160--Hb_001158_220 Hb_002475_160--Hb_000645_150 Hb_002475_160--Hb_011942_080 Hb_000236_370--Hb_000645_150 Hb_002097_090 Hb_002097_090 Hb_000236_370--Hb_002097_090 Hb_028639_060 Hb_028639_060 Hb_000236_370--Hb_028639_060 Hb_000956_030 Hb_000956_030 Hb_000236_370--Hb_000956_030 Hb_000236_370--Hb_000186_280 Hb_000205_120 Hb_000205_120 Hb_000265_150--Hb_000205_120 Hb_000265_150--Hb_012305_070 Hb_004722_060 Hb_004722_060 Hb_000265_150--Hb_004722_060 Hb_000529_080 Hb_000529_080 Hb_000265_150--Hb_000529_080 Hb_000768_050 Hb_000768_050 Hb_000265_150--Hb_000768_050 Hb_000265_150--Hb_008406_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.226 25.8198 14.8797 12.9204 47.7154 63.4505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.0708 31.1506 19.1073 9.23486 5.32612

CAGE analysis