Hb_000116_460

Information

Type -
Description -
Location Contig116: 384009-387171
Sequence    

Annotation

kegg
ID rcu:RCOM_0280590
description leucine-rich repeat-containing protein, putative (EC:3.1.3.16)
nr
ID XP_012065432.1
description PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
swissprot
ID Q9SVW8
description Plant intracellular Ras-group-related LRR protein 4 OS=Arabidopsis thaliana GN=PIRL4 PE=1 SV=1
trembl
ID A0A067LGW3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22422 PE=4 SV=1
Gene Ontology
ID GO:0004721
description plant intracellular ras-group-related lrr protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04885: 384011-386609 , PASA_asmbl_04886: 386729-386905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_460 0.0 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
2 Hb_001946_240 0.0724014398 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
3 Hb_000281_010 0.0781392362 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
4 Hb_004920_060 0.1005479759 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
5 Hb_001473_080 0.1048301736 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
6 Hb_010883_080 0.108314535 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
7 Hb_002675_040 0.1122138004 - - ran-binding protein, putative [Ricinus communis]
8 Hb_000504_160 0.1133542293 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
9 Hb_003125_060 0.1187593804 - - PREDICTED: snurportin-1 [Jatropha curcas]
10 Hb_033594_020 0.1192283737 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
11 Hb_004143_070 0.1215095028 - - cytochrome P450, putative [Ricinus communis]
12 Hb_001474_030 0.123365613 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
13 Hb_001900_120 0.1235243603 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
14 Hb_017895_020 0.1241751435 - - Vacuolar protein sorting protein, putative [Ricinus communis]
15 Hb_001489_070 0.12508454 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
16 Hb_010128_070 0.125643664 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_000685_080 0.1263147445 - - protein binding protein, putative [Ricinus communis]
18 Hb_002612_010 0.1272595237 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
19 Hb_000120_510 0.1302659461 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
20 Hb_001396_290 0.1306749487 - - hypothetical protein B456_005G166600 [Gossypium raimondii]

Gene co-expression network

sample Hb_000116_460 Hb_000116_460 Hb_001946_240 Hb_001946_240 Hb_000116_460--Hb_001946_240 Hb_000281_010 Hb_000281_010 Hb_000116_460--Hb_000281_010 Hb_004920_060 Hb_004920_060 Hb_000116_460--Hb_004920_060 Hb_001473_080 Hb_001473_080 Hb_000116_460--Hb_001473_080 Hb_010883_080 Hb_010883_080 Hb_000116_460--Hb_010883_080 Hb_002675_040 Hb_002675_040 Hb_000116_460--Hb_002675_040 Hb_000504_160 Hb_000504_160 Hb_001946_240--Hb_000504_160 Hb_003540_160 Hb_003540_160 Hb_001946_240--Hb_003540_160 Hb_001946_240--Hb_001473_080 Hb_001946_240--Hb_002675_040 Hb_000953_030 Hb_000953_030 Hb_001946_240--Hb_000953_030 Hb_010128_070 Hb_010128_070 Hb_000281_010--Hb_010128_070 Hb_000685_080 Hb_000685_080 Hb_000281_010--Hb_000685_080 Hb_000281_010--Hb_001946_240 Hb_009646_050 Hb_009646_050 Hb_000281_010--Hb_009646_050 Hb_003106_150 Hb_003106_150 Hb_000281_010--Hb_003106_150 Hb_078477_040 Hb_078477_040 Hb_004920_060--Hb_078477_040 Hb_001731_020 Hb_001731_020 Hb_004920_060--Hb_001731_020 Hb_001489_070 Hb_001489_070 Hb_004920_060--Hb_001489_070 Hb_008725_130 Hb_008725_130 Hb_004920_060--Hb_008725_130 Hb_008246_030 Hb_008246_030 Hb_004920_060--Hb_008246_030 Hb_004376_030 Hb_004376_030 Hb_004920_060--Hb_004376_030 Hb_001922_130 Hb_001922_130 Hb_001473_080--Hb_001922_130 Hb_003125_060 Hb_003125_060 Hb_001473_080--Hb_003125_060 Hb_000120_570 Hb_000120_570 Hb_001473_080--Hb_000120_570 Hb_001473_080--Hb_010883_080 Hb_001473_080--Hb_002675_040 Hb_000116_570 Hb_000116_570 Hb_010883_080--Hb_000116_570 Hb_000016_280 Hb_000016_280 Hb_010883_080--Hb_000016_280 Hb_010883_080--Hb_000685_080 Hb_010883_080--Hb_001922_130 Hb_000186_260 Hb_000186_260 Hb_010883_080--Hb_000186_260 Hb_033594_020 Hb_033594_020 Hb_002675_040--Hb_033594_020 Hb_017895_020 Hb_017895_020 Hb_002675_040--Hb_017895_020 Hb_000343_210 Hb_000343_210 Hb_002675_040--Hb_000343_210 Hb_001900_120 Hb_001900_120 Hb_002675_040--Hb_001900_120 Hb_000329_130 Hb_000329_130 Hb_002675_040--Hb_000329_130 Hb_002675_040--Hb_008725_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.1715 23.4604 13.3442 12.1778 43.5195 30.4277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3904 3.87271 6.57451 6.50594 7.29493

CAGE analysis