Hb_000281_010

Information

Type -
Description -
Location Contig281: 11-910
Sequence    

Annotation

kegg
ID pop:POPTR_0003s20780g
description POPTRDRAFT_413045; zinc finger family protein
nr
ID KDP30629.1
description hypothetical protein JCGZ_16194 [Jatropha curcas]
swissprot
ID P0CH30
description E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1
trembl
ID A0A067KFL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16194 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000281_010 0.0 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
2 Hb_000116_460 0.0781392362 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
3 Hb_010128_070 0.0861065089 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_000685_080 0.0948634327 - - protein binding protein, putative [Ricinus communis]
5 Hb_001946_240 0.0996871997 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
6 Hb_009646_050 0.1039284613 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003106_150 0.1087444078 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
8 Hb_010883_080 0.109781445 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
9 Hb_001474_030 0.1098607156 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
10 Hb_033594_020 0.1128115553 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
11 Hb_003125_060 0.1130894431 - - PREDICTED: snurportin-1 [Jatropha curcas]
12 Hb_000116_570 0.1160420714 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
13 Hb_006615_100 0.1189616744 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
14 Hb_002612_010 0.1192094078 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
15 Hb_001473_080 0.1192123318 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
16 Hb_002675_040 0.1206981487 - - ran-binding protein, putative [Ricinus communis]
17 Hb_001703_130 0.1216867803 - - PREDICTED: vesicle transport v-SNARE 12-like [Populus euphratica]
18 Hb_000740_070 0.1235096388 - - -
19 Hb_000120_510 0.1236360269 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
20 Hb_000016_280 0.1251280509 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]

Gene co-expression network

sample Hb_000281_010 Hb_000281_010 Hb_000116_460 Hb_000116_460 Hb_000281_010--Hb_000116_460 Hb_010128_070 Hb_010128_070 Hb_000281_010--Hb_010128_070 Hb_000685_080 Hb_000685_080 Hb_000281_010--Hb_000685_080 Hb_001946_240 Hb_001946_240 Hb_000281_010--Hb_001946_240 Hb_009646_050 Hb_009646_050 Hb_000281_010--Hb_009646_050 Hb_003106_150 Hb_003106_150 Hb_000281_010--Hb_003106_150 Hb_000116_460--Hb_001946_240 Hb_004920_060 Hb_004920_060 Hb_000116_460--Hb_004920_060 Hb_001473_080 Hb_001473_080 Hb_000116_460--Hb_001473_080 Hb_010883_080 Hb_010883_080 Hb_000116_460--Hb_010883_080 Hb_002675_040 Hb_002675_040 Hb_000116_460--Hb_002675_040 Hb_010128_070--Hb_003106_150 Hb_017075_030 Hb_017075_030 Hb_010128_070--Hb_017075_030 Hb_009620_030 Hb_009620_030 Hb_010128_070--Hb_009620_030 Hb_006615_100 Hb_006615_100 Hb_010128_070--Hb_006615_100 Hb_010128_070--Hb_000116_460 Hb_003125_060 Hb_003125_060 Hb_000685_080--Hb_003125_060 Hb_000685_080--Hb_009646_050 Hb_005399_020 Hb_005399_020 Hb_000685_080--Hb_005399_020 Hb_000016_280 Hb_000016_280 Hb_000685_080--Hb_000016_280 Hb_002977_010 Hb_002977_010 Hb_000685_080--Hb_002977_010 Hb_002133_030 Hb_002133_030 Hb_000685_080--Hb_002133_030 Hb_000504_160 Hb_000504_160 Hb_001946_240--Hb_000504_160 Hb_003540_160 Hb_003540_160 Hb_001946_240--Hb_003540_160 Hb_001946_240--Hb_001473_080 Hb_001946_240--Hb_002675_040 Hb_000953_030 Hb_000953_030 Hb_001946_240--Hb_000953_030 Hb_009646_050--Hb_002977_010 Hb_000116_570 Hb_000116_570 Hb_009646_050--Hb_000116_570 Hb_009646_050--Hb_010883_080 Hb_009646_050--Hb_000016_280 Hb_003106_150--Hb_017075_030 Hb_002849_080 Hb_002849_080 Hb_003106_150--Hb_002849_080 Hb_001157_180 Hb_001157_180 Hb_003106_150--Hb_001157_180 Hb_003106_150--Hb_000504_160 Hb_010128_090 Hb_010128_090 Hb_003106_150--Hb_010128_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
363.275 192.306 99.4644 57.7543 259.497 233.409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.6782 34.0503 73.3499 41.3957 31.2207

CAGE analysis