Hb_009620_030

Information

Type -
Description -
Location Contig9620: 15446-21986
Sequence    

Annotation

kegg
ID rcu:RCOM_1575570
description peptidyl-prolyl cis-trans isomerase, putative (EC:5.2.1.8)
nr
ID XP_012087389.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase CYP59 [Jatropha curcas]
swissprot
ID Q6Q151
description Peptidyl-prolyl cis-trans isomerase CYP59 OS=Arabidopsis thaliana GN=CYP59 PE=1 SV=1
trembl
ID A0A067JYM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22635 PE=4 SV=1
Gene Ontology
ID GO:0005634
description peptidyl-prolyl cis-trans isomerase cyp59

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63767: 15418-21984
cDNA
(Sanger)
(ID:Location)		 004_D18.ab1: 15418-17693

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009620_030 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP59 [Jatropha curcas]
2 Hb_080147_040 0.076489822 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
3 Hb_001900_120 0.0841824458 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
4 Hb_017895_020 0.0854718039 - - Vacuolar protein sorting protein, putative [Ricinus communis]
5 Hb_147737_010 0.0867492854 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
6 Hb_002675_040 0.0881251266 - - ran-binding protein, putative [Ricinus communis]
7 Hb_006588_050 0.0886562397 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
8 Hb_000120_510 0.0920896188 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
9 Hb_140049_020 0.0927673286 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
10 Hb_008725_130 0.0961703993 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
11 Hb_000300_360 0.0965032015 - - PREDICTED: exosome component 10 [Jatropha curcas]
12 Hb_003529_130 0.0966107233 - - PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
13 Hb_000120_620 0.0974610243 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
14 Hb_033594_020 0.0976403544 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
15 Hb_000329_130 0.099887066 - - beta-tubulin cofactor d, putative [Ricinus communis]
16 Hb_015026_050 0.1000628604 - - XPA-binding protein, putative [Ricinus communis]
17 Hb_000313_340 0.100757308 - - DNA repair protein xp-E, putative [Ricinus communis]
18 Hb_000531_090 0.1024427889 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
19 Hb_000098_130 0.1028611276 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
20 Hb_000343_210 0.1034303933 - - ran-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_009620_030 Hb_009620_030 Hb_080147_040 Hb_080147_040 Hb_009620_030--Hb_080147_040 Hb_001900_120 Hb_001900_120 Hb_009620_030--Hb_001900_120 Hb_017895_020 Hb_017895_020 Hb_009620_030--Hb_017895_020 Hb_147737_010 Hb_147737_010 Hb_009620_030--Hb_147737_010 Hb_002675_040 Hb_002675_040 Hb_009620_030--Hb_002675_040 Hb_006588_050 Hb_006588_050 Hb_009620_030--Hb_006588_050 Hb_000300_360 Hb_000300_360 Hb_080147_040--Hb_000300_360 Hb_001953_150 Hb_001953_150 Hb_080147_040--Hb_001953_150 Hb_006452_160 Hb_006452_160 Hb_080147_040--Hb_006452_160 Hb_005188_060 Hb_005188_060 Hb_080147_040--Hb_005188_060 Hb_140049_020 Hb_140049_020 Hb_080147_040--Hb_140049_020 Hb_001900_120--Hb_017895_020 Hb_001900_120--Hb_002675_040 Hb_000329_130 Hb_000329_130 Hb_001900_120--Hb_000329_130 Hb_001050_010 Hb_001050_010 Hb_001900_120--Hb_001050_010 Hb_011609_170 Hb_011609_170 Hb_001900_120--Hb_011609_170 Hb_008725_130 Hb_008725_130 Hb_001900_120--Hb_008725_130 Hb_017895_020--Hb_002675_040 Hb_017895_020--Hb_000329_130 Hb_017895_020--Hb_008725_130 Hb_028872_120 Hb_028872_120 Hb_017895_020--Hb_028872_120 Hb_000914_080 Hb_000914_080 Hb_017895_020--Hb_000914_080 Hb_147737_010--Hb_000329_130 Hb_015026_050 Hb_015026_050 Hb_147737_010--Hb_015026_050 Hb_000343_210 Hb_000343_210 Hb_147737_010--Hb_000343_210 Hb_000567_010 Hb_000567_010 Hb_147737_010--Hb_000567_010 Hb_003124_130 Hb_003124_130 Hb_147737_010--Hb_003124_130 Hb_000531_090 Hb_000531_090 Hb_147737_010--Hb_000531_090 Hb_033594_020 Hb_033594_020 Hb_002675_040--Hb_033594_020 Hb_002675_040--Hb_000343_210 Hb_002675_040--Hb_000329_130 Hb_002675_040--Hb_008725_130 Hb_000261_290 Hb_000261_290 Hb_006588_050--Hb_000261_290 Hb_004899_070 Hb_004899_070 Hb_006588_050--Hb_004899_070 Hb_003866_020 Hb_003866_020 Hb_006588_050--Hb_003866_020 Hb_006816_300 Hb_006816_300 Hb_006588_050--Hb_006816_300 Hb_000120_620 Hb_000120_620 Hb_006588_050--Hb_000120_620 Hb_003097_180 Hb_003097_180 Hb_006588_050--Hb_003097_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.691 39.3537 24.4941 12.6123 41.8024 58.5917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0858 8.81305 15.5911 23.9191 18.3575

CAGE analysis