Hb_006588_050

Information

Type -
Description -
Location Contig6588: 31298-43472
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa001162mg
description hypothetical protein
nr
ID XP_012088219.1
description PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
swissprot
ID Q9SIV2
description 26S proteasome non-ATPase regulatory subunit 2 homolog A OS=Arabidopsis thaliana GN=RPN1A PE=1 SV=2
trembl
ID A0A067JX19
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25741 PE=4 SV=1
Gene Ontology
ID GO:0000502
description 26s proteasome non-atpase regulatory subunit 2 homolog a isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52868: 31369-43472 , PASA_asmbl_52869: 31955-38208 , PASA_asmbl_52871: 39190-39394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006588_050 0.0 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
2 Hb_000261_290 0.069698069 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
3 Hb_004899_070 0.0748211035 - - PREDICTED: RRP12-like protein [Jatropha curcas]
4 Hb_003866_020 0.0779931071 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006816_300 0.0781153257 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
6 Hb_000120_620 0.078643606 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
7 Hb_003097_180 0.0788478157 - - PREDICTED: crossover junction endonuclease MUS81 [Jatropha curcas]
8 Hb_000640_200 0.0806372786 - - hypothetical protein RCOM_1346600 [Ricinus communis]
9 Hb_000098_130 0.0807541366 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
10 Hb_004970_160 0.0812350261 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
11 Hb_000313_340 0.0818090018 - - DNA repair protein xp-E, putative [Ricinus communis]
12 Hb_006501_020 0.0823406626 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
13 Hb_000002_440 0.0830127759 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
14 Hb_078477_040 0.0850029882 - - nuclear movement protein nudc, putative [Ricinus communis]
15 Hb_031069_020 0.0854561829 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
16 Hb_001731_020 0.0861813705 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
17 Hb_147737_010 0.0863061044 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
18 Hb_000120_510 0.0868343933 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
19 Hb_000813_100 0.0868780921 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
20 Hb_009620_030 0.0886562397 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP59 [Jatropha curcas]

Gene co-expression network

sample Hb_006588_050 Hb_006588_050 Hb_000261_290 Hb_000261_290 Hb_006588_050--Hb_000261_290 Hb_004899_070 Hb_004899_070 Hb_006588_050--Hb_004899_070 Hb_003866_020 Hb_003866_020 Hb_006588_050--Hb_003866_020 Hb_006816_300 Hb_006816_300 Hb_006588_050--Hb_006816_300 Hb_000120_620 Hb_000120_620 Hb_006588_050--Hb_000120_620 Hb_003097_180 Hb_003097_180 Hb_006588_050--Hb_003097_180 Hb_000098_130 Hb_000098_130 Hb_000261_290--Hb_000098_130 Hb_000261_290--Hb_004899_070 Hb_000261_290--Hb_000120_620 Hb_000313_340 Hb_000313_340 Hb_000261_290--Hb_000313_340 Hb_000261_290--Hb_003097_180 Hb_004899_070--Hb_000098_130 Hb_004899_070--Hb_000120_620 Hb_004970_160 Hb_004970_160 Hb_004899_070--Hb_004970_160 Hb_000640_200 Hb_000640_200 Hb_004899_070--Hb_000640_200 Hb_000813_100 Hb_000813_100 Hb_004899_070--Hb_000813_100 Hb_000227_380 Hb_000227_380 Hb_003866_020--Hb_000227_380 Hb_003866_020--Hb_006816_300 Hb_003866_020--Hb_004899_070 Hb_000239_070 Hb_000239_070 Hb_003866_020--Hb_000239_070 Hb_000340_160 Hb_000340_160 Hb_003866_020--Hb_000340_160 Hb_007849_020 Hb_007849_020 Hb_006816_300--Hb_007849_020 Hb_002105_080 Hb_002105_080 Hb_006816_300--Hb_002105_080 Hb_003018_160 Hb_003018_160 Hb_006816_300--Hb_003018_160 Hb_000046_450 Hb_000046_450 Hb_006816_300--Hb_000046_450 Hb_006816_300--Hb_000227_380 Hb_000250_070 Hb_000250_070 Hb_006816_300--Hb_000250_070 Hb_000120_620--Hb_004970_160 Hb_000120_620--Hb_000098_130 Hb_000120_620--Hb_003097_180 Hb_001178_150 Hb_001178_150 Hb_000120_620--Hb_001178_150 Hb_003097_180--Hb_000098_130 Hb_003097_180--Hb_004899_070 Hb_003097_180--Hb_001178_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
195.865 145.414 59.2831 47.935 181.745 249.35
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.9623 21.6807 50.9202 85.332 42.3182

CAGE analysis