Hb_005122_060

Information

Type -
Description -
Location Contig5122: 71092-78630
Sequence    

Annotation

kegg
ID egr:104428692
description DNA topoisomerase 3-beta
nr
ID CBI39422.3
description unnamed protein product [Vitis vinifera]
swissprot
ID F4ISQ7
description DNA topoisomerase 3-beta OS=Arabidopsis thaliana GN=At2g32000 PE=2 SV=1
trembl
ID A0A058ZVX2
description DNA topoisomerase OS=Eucalyptus grandis GN=EUGRSUZ_L00646 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna topoisomerase 3-beta isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46372: 62456-75378 , PASA_asmbl_46374: 78162-93877
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005122_060 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_006816_410 0.0862339681 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
3 Hb_006588_050 0.0965097899 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
4 Hb_002105_080 0.096672132 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
5 Hb_006816_300 0.1040788333 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
6 Hb_000375_370 0.1119752257 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
7 Hb_015763_020 0.1151250972 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
8 Hb_007348_030 0.1154597216 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
9 Hb_000116_280 0.1157689509 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
10 Hb_006501_020 0.1166365764 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
11 Hb_000365_060 0.1188318383 - - 5'->3' exoribonuclease, putative [Ricinus communis]
12 Hb_000342_090 0.1190437916 - - PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]
13 Hb_003157_010 0.1203111151 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
14 Hb_013753_010 0.1212173951 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
15 Hb_003866_020 0.1212762914 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000002_440 0.1239112881 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
17 Hb_000023_060 0.12576597 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
18 Hb_101151_020 0.1261259289 - - DNA binding protein, putative [Ricinus communis]
19 Hb_007904_180 0.1264998739 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
20 Hb_000227_380 0.1268593197 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_005122_060 Hb_005122_060 Hb_006816_410 Hb_006816_410 Hb_005122_060--Hb_006816_410 Hb_006588_050 Hb_006588_050 Hb_005122_060--Hb_006588_050 Hb_002105_080 Hb_002105_080 Hb_005122_060--Hb_002105_080 Hb_006816_300 Hb_006816_300 Hb_005122_060--Hb_006816_300 Hb_000375_370 Hb_000375_370 Hb_005122_060--Hb_000375_370 Hb_015763_020 Hb_015763_020 Hb_005122_060--Hb_015763_020 Hb_006816_410--Hb_002105_080 Hb_000023_060 Hb_000023_060 Hb_006816_410--Hb_000023_060 Hb_001433_190 Hb_001433_190 Hb_006816_410--Hb_001433_190 Hb_006816_410--Hb_006588_050 Hb_042487_010 Hb_042487_010 Hb_006816_410--Hb_042487_010 Hb_000261_290 Hb_000261_290 Hb_006588_050--Hb_000261_290 Hb_004899_070 Hb_004899_070 Hb_006588_050--Hb_004899_070 Hb_003866_020 Hb_003866_020 Hb_006588_050--Hb_003866_020 Hb_006588_050--Hb_006816_300 Hb_000120_620 Hb_000120_620 Hb_006588_050--Hb_000120_620 Hb_003097_180 Hb_003097_180 Hb_006588_050--Hb_003097_180 Hb_002105_080--Hb_006816_300 Hb_007849_020 Hb_007849_020 Hb_002105_080--Hb_007849_020 Hb_000116_280 Hb_000116_280 Hb_002105_080--Hb_000116_280 Hb_005295_040 Hb_005295_040 Hb_002105_080--Hb_005295_040 Hb_000227_380 Hb_000227_380 Hb_002105_080--Hb_000227_380 Hb_000250_070 Hb_000250_070 Hb_002105_080--Hb_000250_070 Hb_006816_300--Hb_007849_020 Hb_003018_160 Hb_003018_160 Hb_006816_300--Hb_003018_160 Hb_000046_450 Hb_000046_450 Hb_006816_300--Hb_000046_450 Hb_006816_300--Hb_000227_380 Hb_006816_300--Hb_000250_070 Hb_031089_030 Hb_031089_030 Hb_000375_370--Hb_031089_030 Hb_001247_140 Hb_001247_140 Hb_000375_370--Hb_001247_140 Hb_000375_370--Hb_006816_410 Hb_006501_020 Hb_006501_020 Hb_000375_370--Hb_006501_020 Hb_000365_060 Hb_000365_060 Hb_000375_370--Hb_000365_060 Hb_015763_020--Hb_000227_380 Hb_000264_100 Hb_000264_100 Hb_015763_020--Hb_000264_100 Hb_000120_610 Hb_000120_610 Hb_015763_020--Hb_000120_610 Hb_000002_440 Hb_000002_440 Hb_015763_020--Hb_000002_440 Hb_015763_020--Hb_004899_070 Hb_000594_020 Hb_000594_020 Hb_015763_020--Hb_000594_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.1454 29.2665 5.73281 6.86555 37.384 48.1513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.00538 3.6866 11.995 19.1652 5.13355

CAGE analysis