Hb_003157_010

Information

Type -
Description -
Location Contig3157: 4022-18028
Sequence    

Annotation

kegg
ID pop:POPTR_0010s24820g
description POPTRDRAFT_833932; exocyst subunit EXO70 family protein
nr
ID XP_012089839.1
description PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
swissprot
ID Q9LZD3
description Exocyst complex component EXO70A1 OS=Arabidopsis thaliana GN=EXO70A1 PE=1 SV=1
trembl
ID A0A067JIZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01980 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component exo70a1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33285: 4210-10538 , PASA_asmbl_33286: 4348-17987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003157_010 0.0 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
2 Hb_057451_010 0.0727072798 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
3 Hb_006501_020 0.0846301457 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
4 Hb_000808_070 0.0877392084 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
5 Hb_009028_030 0.0914889087 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
6 Hb_000640_200 0.0970953346 - - hypothetical protein RCOM_1346600 [Ricinus communis]
7 Hb_001989_020 0.1103100255 - - hypothetical protein JCGZ_15521 [Jatropha curcas]
8 Hb_004899_070 0.111232095 - - PREDICTED: RRP12-like protein [Jatropha curcas]
9 Hb_015763_020 0.1116403279 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
10 Hb_001301_230 0.11178096 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
11 Hb_000265_250 0.1124216751 - - auxilin, putative [Ricinus communis]
12 Hb_141547_010 0.1136522647 - - PREDICTED: ARF guanine-nucleotide exchange factor GNOM [Jatropha curcas]
13 Hb_006588_050 0.1153542978 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
14 Hb_010584_010 0.1154109982 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
15 Hb_007257_050 0.1170397509 - - protein with unknown function [Ricinus communis]
16 Hb_018133_030 0.1191507719 - - Heme-binding protein, putative [Ricinus communis]
17 Hb_000023_060 0.1191974297 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
18 Hb_000264_100 0.1194925075 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005122_060 0.1203111151 - - unnamed protein product [Vitis vinifera]
20 Hb_000032_310 0.121322262 - - ring finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003157_010 Hb_003157_010 Hb_057451_010 Hb_057451_010 Hb_003157_010--Hb_057451_010 Hb_006501_020 Hb_006501_020 Hb_003157_010--Hb_006501_020 Hb_000808_070 Hb_000808_070 Hb_003157_010--Hb_000808_070 Hb_009028_030 Hb_009028_030 Hb_003157_010--Hb_009028_030 Hb_000640_200 Hb_000640_200 Hb_003157_010--Hb_000640_200 Hb_001989_020 Hb_001989_020 Hb_003157_010--Hb_001989_020 Hb_057451_010--Hb_009028_030 Hb_057451_010--Hb_000640_200 Hb_003710_040 Hb_003710_040 Hb_057451_010--Hb_003710_040 Hb_004899_070 Hb_004899_070 Hb_057451_010--Hb_004899_070 Hb_000313_340 Hb_000313_340 Hb_057451_010--Hb_000313_340 Hb_006501_020--Hb_000640_200 Hb_006588_050 Hb_006588_050 Hb_006501_020--Hb_006588_050 Hb_031069_020 Hb_031069_020 Hb_006501_020--Hb_031069_020 Hb_007904_180 Hb_007904_180 Hb_006501_020--Hb_007904_180 Hb_006501_020--Hb_004899_070 Hb_001301_230 Hb_001301_230 Hb_000808_070--Hb_001301_230 Hb_000808_070--Hb_006501_020 Hb_018133_030 Hb_018133_030 Hb_000808_070--Hb_018133_030 Hb_007257_050 Hb_007257_050 Hb_000808_070--Hb_007257_050 Hb_000932_070 Hb_000932_070 Hb_000808_070--Hb_000932_070 Hb_009028_030--Hb_003710_040 Hb_000265_250 Hb_000265_250 Hb_009028_030--Hb_000265_250 Hb_009028_030--Hb_004899_070 Hb_011465_030 Hb_011465_030 Hb_009028_030--Hb_011465_030 Hb_000640_200--Hb_004899_070 Hb_000640_200--Hb_006588_050 Hb_000813_100 Hb_000813_100 Hb_000640_200--Hb_000813_100 Hb_000640_200--Hb_031069_020 Hb_000032_310 Hb_000032_310 Hb_001989_020--Hb_000032_310 Hb_000649_010 Hb_000649_010 Hb_001989_020--Hb_000649_010 Hb_000023_060 Hb_000023_060 Hb_001989_020--Hb_000023_060 Hb_001396_260 Hb_001396_260 Hb_001989_020--Hb_001396_260 Hb_007101_180 Hb_007101_180 Hb_001989_020--Hb_007101_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
128.904 181.597 27.587 36.4045 137.61 169.012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.4179 11.3829 37.8901 86.6649 29.0876

CAGE analysis