Hb_018133_030

Information

Type -
Description -
Location Contig18133: 20708-22857
Sequence    

Annotation

kegg
ID rcu:RCOM_1509790
description Heme-binding protein, putative
nr
ID XP_002511361.1
description Heme-binding protein, putative [Ricinus communis]
swissprot
ID Q9Y5Z4
description Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE=1 SV=1
trembl
ID B9RAY6
description Heme-binding protein, putative OS=Ricinus communis GN=RCOM_1509790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17605: 13601-20087 , PASA_asmbl_17607: 13855-20022 , PASA_asmbl_17608: 20843-23016
cDNA
(Sanger)
(ID:Location)		 013_J04.ab1: 20867-22859 , 029_N06.ab1: 20867-22778 , 046_G20.ab1: 20867-22830 , 047_I11.ab1: 20867-22866 , 048_M11.ab1: 20867-22831

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018133_030 0.0 - - Heme-binding protein, putative [Ricinus communis]
2 Hb_009028_030 0.1100124985 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
3 Hb_057451_010 0.1116650125 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
4 Hb_000808_070 0.1172387709 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
5 Hb_004449_050 0.1178762212 - - PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Jatropha curcas]
6 Hb_030827_060 0.1183019444 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2b [Jatropha curcas]
7 Hb_164010_070 0.118494803 - - Paramyosin, putative [Ricinus communis]
8 Hb_000340_110 0.1191036274 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
9 Hb_003157_010 0.1191507719 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
10 Hb_026198_040 0.1199151289 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
11 Hb_001221_160 0.1227449965 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
12 Hb_000932_070 0.1237252894 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
13 Hb_000465_480 0.1243995287 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]
14 Hb_003349_010 0.1279336183 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
15 Hb_005510_010 0.1287917556 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
16 Hb_003517_060 0.1300049073 - - hypothetical protein CISIN_1g044999mg, partial [Citrus sinensis]
17 Hb_000544_060 0.1306295004 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
18 Hb_002316_050 0.1307026806 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003710_040 0.1307617892 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
20 Hb_000265_250 0.1324702134 - - auxilin, putative [Ricinus communis]

Gene co-expression network

sample Hb_018133_030 Hb_018133_030 Hb_009028_030 Hb_009028_030 Hb_018133_030--Hb_009028_030 Hb_057451_010 Hb_057451_010 Hb_018133_030--Hb_057451_010 Hb_000808_070 Hb_000808_070 Hb_018133_030--Hb_000808_070 Hb_004449_050 Hb_004449_050 Hb_018133_030--Hb_004449_050 Hb_030827_060 Hb_030827_060 Hb_018133_030--Hb_030827_060 Hb_164010_070 Hb_164010_070 Hb_018133_030--Hb_164010_070 Hb_009028_030--Hb_057451_010 Hb_003710_040 Hb_003710_040 Hb_009028_030--Hb_003710_040 Hb_000265_250 Hb_000265_250 Hb_009028_030--Hb_000265_250 Hb_003157_010 Hb_003157_010 Hb_009028_030--Hb_003157_010 Hb_004899_070 Hb_004899_070 Hb_009028_030--Hb_004899_070 Hb_011465_030 Hb_011465_030 Hb_009028_030--Hb_011465_030 Hb_000640_200 Hb_000640_200 Hb_057451_010--Hb_000640_200 Hb_057451_010--Hb_003157_010 Hb_057451_010--Hb_003710_040 Hb_057451_010--Hb_004899_070 Hb_000313_340 Hb_000313_340 Hb_057451_010--Hb_000313_340 Hb_001301_230 Hb_001301_230 Hb_000808_070--Hb_001301_230 Hb_000808_070--Hb_003157_010 Hb_006501_020 Hb_006501_020 Hb_000808_070--Hb_006501_020 Hb_007257_050 Hb_007257_050 Hb_000808_070--Hb_007257_050 Hb_000932_070 Hb_000932_070 Hb_000808_070--Hb_000932_070 Hb_003517_060 Hb_003517_060 Hb_004449_050--Hb_003517_060 Hb_004449_050--Hb_030827_060 Hb_003349_010 Hb_003349_010 Hb_004449_050--Hb_003349_010 Hb_000340_110 Hb_000340_110 Hb_004449_050--Hb_000340_110 Hb_026198_040 Hb_026198_040 Hb_004449_050--Hb_026198_040 Hb_000422_110 Hb_000422_110 Hb_030827_060--Hb_000422_110 Hb_030827_060--Hb_026198_040 Hb_104265_030 Hb_104265_030 Hb_030827_060--Hb_104265_030 Hb_002999_060 Hb_002999_060 Hb_030827_060--Hb_002999_060 Hb_164010_070--Hb_000340_110 Hb_144824_010 Hb_144824_010 Hb_164010_070--Hb_144824_010 Hb_124677_060 Hb_124677_060 Hb_164010_070--Hb_124677_060 Hb_006683_040 Hb_006683_040 Hb_164010_070--Hb_006683_040 Hb_001053_030 Hb_001053_030 Hb_164010_070--Hb_001053_030 Hb_164010_070--Hb_000932_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
152.883 360.614 54.6311 75.8789 270.324 187.592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.483 28.4434 92.7056 105.59 32.6209

CAGE analysis