Hb_004449_050

Information

Type -
Description -
Location Contig4449: 39940-43206
Sequence    

Annotation

kegg
ID rcu:RCOM_1686080
description Leucine-rich repeat receptor protein kinase EXS precursor, putative (EC:2.7.11.30 1.3.1.74)
nr
ID XP_012068764.1
description PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Jatropha curcas]
swissprot
ID Q9C7S5
description Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1
trembl
ID A0A067L923
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24603 PE=4 SV=1
Gene Ontology
ID GO:0004672
description tyrosine-sulfated glycopeptide receptor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42813: 41892-42189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004449_050 0.0 - - PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Jatropha curcas]
2 Hb_018133_030 0.1178762212 - - Heme-binding protein, putative [Ricinus communis]
3 Hb_003517_060 0.1196500718 - - hypothetical protein CISIN_1g044999mg, partial [Citrus sinensis]
4 Hb_030827_060 0.1201419844 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2b [Jatropha curcas]
5 Hb_003349_010 0.1445504557 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
6 Hb_000340_110 0.1580870909 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
7 Hb_026198_040 0.1596302745 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
8 Hb_164010_070 0.1597501587 - - Paramyosin, putative [Ricinus communis]
9 Hb_002609_090 0.1618558248 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_002316_050 0.1642949343 - - conserved hypothetical protein [Ricinus communis]
11 Hb_012226_010 0.1649438358 - - PREDICTED: protein DGCR14 [Jatropha curcas]
12 Hb_104265_030 0.1699011589 - - hypothetical protein POPTR_0001s31230g [Populus trichocarpa]
13 Hb_001638_040 0.1739261738 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
14 Hb_144824_010 0.1742724191 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
15 Hb_009028_030 0.1751391416 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
16 Hb_000720_070 0.176271396 transcription factor TF Family: HSF hypothetical protein JCGZ_20639 [Jatropha curcas]
17 Hb_001950_030 0.1773762787 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
18 Hb_008864_040 0.1783509342 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
19 Hb_001189_130 0.1786415516 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
20 Hb_001053_030 0.179417907 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004449_050 Hb_004449_050 Hb_018133_030 Hb_018133_030 Hb_004449_050--Hb_018133_030 Hb_003517_060 Hb_003517_060 Hb_004449_050--Hb_003517_060 Hb_030827_060 Hb_030827_060 Hb_004449_050--Hb_030827_060 Hb_003349_010 Hb_003349_010 Hb_004449_050--Hb_003349_010 Hb_000340_110 Hb_000340_110 Hb_004449_050--Hb_000340_110 Hb_026198_040 Hb_026198_040 Hb_004449_050--Hb_026198_040 Hb_009028_030 Hb_009028_030 Hb_018133_030--Hb_009028_030 Hb_057451_010 Hb_057451_010 Hb_018133_030--Hb_057451_010 Hb_000808_070 Hb_000808_070 Hb_018133_030--Hb_000808_070 Hb_018133_030--Hb_030827_060 Hb_164010_070 Hb_164010_070 Hb_018133_030--Hb_164010_070 Hb_000465_480 Hb_000465_480 Hb_003517_060--Hb_000465_480 Hb_000336_140 Hb_000336_140 Hb_003517_060--Hb_000336_140 Hb_003517_060--Hb_018133_030 Hb_001053_030 Hb_001053_030 Hb_003517_060--Hb_001053_030 Hb_000140_070 Hb_000140_070 Hb_003517_060--Hb_000140_070 Hb_000422_110 Hb_000422_110 Hb_030827_060--Hb_000422_110 Hb_030827_060--Hb_026198_040 Hb_104265_030 Hb_104265_030 Hb_030827_060--Hb_104265_030 Hb_002999_060 Hb_002999_060 Hb_030827_060--Hb_002999_060 Hb_002849_080 Hb_002849_080 Hb_003349_010--Hb_002849_080 Hb_001999_250 Hb_001999_250 Hb_003349_010--Hb_001999_250 Hb_003349_010--Hb_009028_030 Hb_010584_010 Hb_010584_010 Hb_003349_010--Hb_010584_010 Hb_001247_230 Hb_001247_230 Hb_003349_010--Hb_001247_230 Hb_007257_050 Hb_007257_050 Hb_003349_010--Hb_007257_050 Hb_029223_050 Hb_029223_050 Hb_000340_110--Hb_029223_050 Hb_001141_370 Hb_001141_370 Hb_000340_110--Hb_001141_370 Hb_001511_110 Hb_001511_110 Hb_000340_110--Hb_001511_110 Hb_000544_060 Hb_000544_060 Hb_000340_110--Hb_000544_060 Hb_000340_110--Hb_026198_040 Hb_144824_010 Hb_144824_010 Hb_000340_110--Hb_144824_010 Hb_026198_040--Hb_029223_050 Hb_026198_040--Hb_001141_370 Hb_026198_040--Hb_000544_060 Hb_000832_320 Hb_000832_320 Hb_026198_040--Hb_000832_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.770074 2.63256 0.146396 0.574558 1.77492 0.95226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.159049 0.385916 0.53944 0.409356 0.156008

CAGE analysis