Hb_000465_480

Information

Type -
Description -
Location Contig465: 450945-452984
Sequence    

Annotation

kegg
ID tcc:TCM_015887
description Tetratricopeptide repeat (TPR)-like superfamily protein
nr
ID XP_012070073.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]
swissprot
ID Q9M4P3
description Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
trembl
ID A0A067KUV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03463 PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44013: 445248-450105 , PASA_asmbl_44015: 417521-450277
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_480 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]
2 Hb_000920_250 0.1035047815 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_0655500 [Ricinus communis]
3 Hb_001902_060 0.1047810124 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
4 Hb_001059_100 0.1149055404 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
5 Hb_010578_060 0.1149945764 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
6 Hb_000465_170 0.1175265525 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
7 Hb_007676_100 0.1181877812 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
8 Hb_011218_070 0.1209972449 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
9 Hb_000832_320 0.1221423046 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
10 Hb_000544_060 0.1239560404 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
11 Hb_007904_080 0.1241412481 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
12 Hb_002188_110 0.1242609291 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
13 Hb_018133_030 0.1243995287 - - Heme-binding protein, putative [Ricinus communis]
14 Hb_006663_040 0.1246999078 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
15 Hb_026198_040 0.1254825255 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
16 Hb_001221_160 0.1265717163 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
17 Hb_000320_380 0.1270378772 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
18 Hb_000959_040 0.1281283472 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
19 Hb_000107_530 0.1282889525 - - calcium-dependent protein kinase, putative [Ricinus communis]
20 Hb_000080_170 0.1285482447 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000465_480 Hb_000465_480 Hb_000920_250 Hb_000920_250 Hb_000465_480--Hb_000920_250 Hb_001902_060 Hb_001902_060 Hb_000465_480--Hb_001902_060 Hb_001059_100 Hb_001059_100 Hb_000465_480--Hb_001059_100 Hb_010578_060 Hb_010578_060 Hb_000465_480--Hb_010578_060 Hb_000465_170 Hb_000465_170 Hb_000465_480--Hb_000465_170 Hb_007676_100 Hb_007676_100 Hb_000465_480--Hb_007676_100 Hb_000920_250--Hb_001902_060 Hb_000544_060 Hb_000544_060 Hb_000920_250--Hb_000544_060 Hb_001141_370 Hb_001141_370 Hb_000920_250--Hb_001141_370 Hb_001117_190 Hb_001117_190 Hb_000920_250--Hb_001117_190 Hb_000920_250--Hb_001059_100 Hb_000152_340 Hb_000152_340 Hb_001902_060--Hb_000152_340 Hb_001902_060--Hb_000544_060 Hb_002499_070 Hb_002499_070 Hb_001902_060--Hb_002499_070 Hb_001902_060--Hb_007676_100 Hb_001902_060--Hb_001141_370 Hb_000025_360 Hb_000025_360 Hb_001059_100--Hb_000025_360 Hb_000865_080 Hb_000865_080 Hb_001059_100--Hb_000865_080 Hb_001059_100--Hb_007676_100 Hb_000140_070 Hb_000140_070 Hb_001059_100--Hb_000140_070 Hb_000959_040 Hb_000959_040 Hb_001059_100--Hb_000959_040 Hb_000291_190 Hb_000291_190 Hb_001059_100--Hb_000291_190 Hb_004718_010 Hb_004718_010 Hb_010578_060--Hb_004718_010 Hb_010578_060--Hb_000959_040 Hb_183963_030 Hb_183963_030 Hb_010578_060--Hb_183963_030 Hb_002188_110 Hb_002188_110 Hb_010578_060--Hb_002188_110 Hb_001247_070 Hb_001247_070 Hb_010578_060--Hb_001247_070 Hb_004543_030 Hb_004543_030 Hb_010578_060--Hb_004543_030 Hb_000107_530 Hb_000107_530 Hb_000465_170--Hb_000107_530 Hb_000878_180 Hb_000878_180 Hb_000465_170--Hb_000878_180 Hb_000021_040 Hb_000021_040 Hb_000465_170--Hb_000021_040 Hb_093432_010 Hb_093432_010 Hb_000465_170--Hb_093432_010 Hb_002255_050 Hb_002255_050 Hb_000465_170--Hb_002255_050 Hb_000215_190 Hb_000215_190 Hb_000465_170--Hb_000215_190 Hb_004659_080 Hb_004659_080 Hb_007676_100--Hb_004659_080 Hb_007676_100--Hb_000959_040 Hb_006252_020 Hb_006252_020 Hb_007676_100--Hb_006252_020 Hb_000331_330 Hb_000331_330 Hb_007676_100--Hb_000331_330 Hb_007676_100--Hb_002188_110 Hb_004128_050 Hb_004128_050 Hb_007676_100--Hb_004128_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47213 2.97703 0.838279 0.488426 2.5744 2.33763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.507806 0.469048 1.61506 0.787753 0.661227

CAGE analysis