Hb_000465_170

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig465: 116530-121202
Sequence    

Annotation

kegg
ID cit:102619396
description transcription factor MYB1R1-like
nr
ID XP_012070032.1
description PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
swissprot
ID Q2V9B0
description Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1
trembl
ID A0A067KUT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03433 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb1r1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43973: 116548-121131 , PASA_asmbl_43974: 117804-118232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_170 0.0 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
2 Hb_000107_530 0.0934447465 - - calcium-dependent protein kinase, putative [Ricinus communis]
3 Hb_000878_180 0.098343996 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
4 Hb_000021_040 0.099005166 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
5 Hb_093432_010 0.0999125664 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
6 Hb_002255_050 0.1045936307 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
7 Hb_000215_190 0.1069271012 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]
8 Hb_009969_030 0.1071076571 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
9 Hb_002392_030 0.1072545152 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
10 Hb_002066_080 0.1080939575 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
11 Hb_003455_020 0.1107574711 - - PREDICTED: transportin-1 [Jatropha curcas]
12 Hb_140171_010 0.1118806999 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
13 Hb_002601_120 0.1130207479 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
14 Hb_000645_120 0.1136414943 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
15 Hb_000510_310 0.1149659315 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
16 Hb_000836_270 0.115536849 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
17 Hb_000680_090 0.1155743908 - - Protein SEY1, putative [Ricinus communis]
18 Hb_174821_010 0.1167145247 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
19 Hb_000375_130 0.1168891313 - - Leucine-rich repeat transmembrane protein kinase family protein isoform 1 [Theobroma cacao]
20 Hb_000465_480 0.1175265525 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000465_170 Hb_000465_170 Hb_000107_530 Hb_000107_530 Hb_000465_170--Hb_000107_530 Hb_000878_180 Hb_000878_180 Hb_000465_170--Hb_000878_180 Hb_000021_040 Hb_000021_040 Hb_000465_170--Hb_000021_040 Hb_093432_010 Hb_093432_010 Hb_000465_170--Hb_093432_010 Hb_002255_050 Hb_002255_050 Hb_000465_170--Hb_002255_050 Hb_000215_190 Hb_000215_190 Hb_000465_170--Hb_000215_190 Hb_000313_340 Hb_000313_340 Hb_000107_530--Hb_000313_340 Hb_007885_070 Hb_007885_070 Hb_000107_530--Hb_007885_070 Hb_000320_380 Hb_000320_380 Hb_000107_530--Hb_000320_380 Hb_000417_160 Hb_000417_160 Hb_000107_530--Hb_000417_160 Hb_002221_050 Hb_002221_050 Hb_000107_530--Hb_002221_050 Hb_015026_050 Hb_015026_050 Hb_000107_530--Hb_015026_050 Hb_002025_060 Hb_002025_060 Hb_000878_180--Hb_002025_060 Hb_002615_090 Hb_002615_090 Hb_000878_180--Hb_002615_090 Hb_000680_090 Hb_000680_090 Hb_000878_180--Hb_000680_090 Hb_002235_300 Hb_002235_300 Hb_000878_180--Hb_002235_300 Hb_009615_170 Hb_009615_170 Hb_000878_180--Hb_009615_170 Hb_000084_250 Hb_000084_250 Hb_000878_180--Hb_000084_250 Hb_022250_110 Hb_022250_110 Hb_000021_040--Hb_022250_110 Hb_000037_110 Hb_000037_110 Hb_000021_040--Hb_000037_110 Hb_000768_190 Hb_000768_190 Hb_000021_040--Hb_000768_190 Hb_000343_190 Hb_000343_190 Hb_000021_040--Hb_000343_190 Hb_000209_070 Hb_000209_070 Hb_000021_040--Hb_000209_070 Hb_001473_090 Hb_001473_090 Hb_000021_040--Hb_001473_090 Hb_009969_030 Hb_009969_030 Hb_093432_010--Hb_009969_030 Hb_000755_030 Hb_000755_030 Hb_093432_010--Hb_000755_030 Hb_003966_030 Hb_003966_030 Hb_093432_010--Hb_003966_030 Hb_000283_070 Hb_000283_070 Hb_093432_010--Hb_000283_070 Hb_000574_100 Hb_000574_100 Hb_093432_010--Hb_000574_100 Hb_003124_130 Hb_003124_130 Hb_093432_010--Hb_003124_130 Hb_002255_050--Hb_000283_070 Hb_006831_110 Hb_006831_110 Hb_002255_050--Hb_006831_110 Hb_022408_010 Hb_022408_010 Hb_002255_050--Hb_022408_010 Hb_002255_050--Hb_002221_050 Hb_009627_010 Hb_009627_010 Hb_002255_050--Hb_009627_010 Hb_000645_120 Hb_000645_120 Hb_002255_050--Hb_000645_120 Hb_001492_010 Hb_001492_010 Hb_000215_190--Hb_001492_010 Hb_001454_320 Hb_001454_320 Hb_000215_190--Hb_001454_320 Hb_000836_270 Hb_000836_270 Hb_000215_190--Hb_000836_270 Hb_000158_130 Hb_000158_130 Hb_000215_190--Hb_000158_130 Hb_000215_190--Hb_003124_130 Hb_000215_190--Hb_000645_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.3566 28.7993 17.0741 15.5355 39.2784 40.0152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.75799 7.21346 27.2342 17.2587 8.11423

CAGE analysis