Hb_009969_030

Information

Type -
Description -
Location Contig9969: 31522-44938
Sequence    

Annotation

kegg
ID rcu:RCOM_0887890
description argininosuccinate synthase, putative (EC:6.3.4.5)
nr
ID XP_012068472.1
description PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
swissprot
ID Q9SZX3
description Argininosuccinate synthase, chloroplastic OS=Arabidopsis thaliana GN=At4g24830 PE=2 SV=3
trembl
ID A0A067L9C7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03235 PE=3 SV=1
Gene Ontology
ID GO:0004055
description argininosuccinate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009969_030 0.0 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
2 Hb_093432_010 0.0542428773 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
3 Hb_033187_050 0.0812000407 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
4 Hb_000347_130 0.0820407442 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
5 Hb_000755_030 0.082783801 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
6 Hb_003124_130 0.0916180352 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
7 Hb_000283_070 0.0934172426 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
8 Hb_000645_120 0.0956436632 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
9 Hb_003966_030 0.0974219534 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
10 Hb_056196_050 0.0985076834 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
11 Hb_000832_220 0.0991168823 - - PREDICTED: uncharacterized protein LOC105641576 isoform X1 [Jatropha curcas]
12 Hb_008714_020 0.0994282022 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
13 Hb_000699_250 0.1025703679 - - Poly(rC)-binding protein, putative [Ricinus communis]
14 Hb_000739_220 0.1036645851 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
15 Hb_000613_080 0.1053382195 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
16 Hb_001322_210 0.1057357146 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
17 Hb_147737_010 0.1061083986 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
18 Hb_000046_450 0.1068656427 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
19 Hb_000465_170 0.1071076571 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
20 Hb_011030_010 0.1078865482 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_009969_030 Hb_009969_030 Hb_093432_010 Hb_093432_010 Hb_009969_030--Hb_093432_010 Hb_033187_050 Hb_033187_050 Hb_009969_030--Hb_033187_050 Hb_000347_130 Hb_000347_130 Hb_009969_030--Hb_000347_130 Hb_000755_030 Hb_000755_030 Hb_009969_030--Hb_000755_030 Hb_003124_130 Hb_003124_130 Hb_009969_030--Hb_003124_130 Hb_000283_070 Hb_000283_070 Hb_009969_030--Hb_000283_070 Hb_093432_010--Hb_000755_030 Hb_003966_030 Hb_003966_030 Hb_093432_010--Hb_003966_030 Hb_093432_010--Hb_000283_070 Hb_000574_100 Hb_000574_100 Hb_093432_010--Hb_000574_100 Hb_093432_010--Hb_003124_130 Hb_000645_120 Hb_000645_120 Hb_033187_050--Hb_000645_120 Hb_011030_010 Hb_011030_010 Hb_033187_050--Hb_011030_010 Hb_147737_010 Hb_147737_010 Hb_033187_050--Hb_147737_010 Hb_003531_060 Hb_003531_060 Hb_033187_050--Hb_003531_060 Hb_000531_090 Hb_000531_090 Hb_033187_050--Hb_000531_090 Hb_000600_070 Hb_000600_070 Hb_000347_130--Hb_000600_070 Hb_000347_130--Hb_003966_030 Hb_000567_010 Hb_000567_010 Hb_000347_130--Hb_000567_010 Hb_005494_020 Hb_005494_020 Hb_000347_130--Hb_005494_020 Hb_025012_010 Hb_025012_010 Hb_000347_130--Hb_025012_010 Hb_003428_070 Hb_003428_070 Hb_000347_130--Hb_003428_070 Hb_006951_020 Hb_006951_020 Hb_000755_030--Hb_006951_020 Hb_000755_030--Hb_000645_120 Hb_000755_030--Hb_033187_050 Hb_011310_210 Hb_011310_210 Hb_000755_030--Hb_011310_210 Hb_003124_130--Hb_000567_010 Hb_000796_190 Hb_000796_190 Hb_003124_130--Hb_000796_190 Hb_003124_130--Hb_147737_010 Hb_001454_320 Hb_001454_320 Hb_003124_130--Hb_001454_320 Hb_000158_130 Hb_000158_130 Hb_003124_130--Hb_000158_130 Hb_000160_290 Hb_000160_290 Hb_003124_130--Hb_000160_290 Hb_000107_500 Hb_000107_500 Hb_000283_070--Hb_000107_500 Hb_000283_070--Hb_000645_120 Hb_006831_110 Hb_006831_110 Hb_000283_070--Hb_006831_110 Hb_002255_050 Hb_002255_050 Hb_000283_070--Hb_002255_050 Hb_000283_070--Hb_003428_070 Hb_001797_050 Hb_001797_050 Hb_000283_070--Hb_001797_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.4202 36.5278 18.8227 24.3635 40.5818 80.657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.3799 10.1847 32.9526 21.8887 15.4541

CAGE analysis