Hb_000920_250

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig920: 151749-155866
Sequence    

Annotation

kegg
ID rcu:RCOM_0655500
description hypothetical protein
nr
ID XP_002521391.1
description hypothetical protein RCOM_0655500 [Ricinus communis]
swissprot
ID Q9V780
description Protein lap1 OS=Drosophila melanogaster GN=Lap1 PE=2 SV=1
trembl
ID B9S5X2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0655500 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance rpp13-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62418: 152018-153088 , PASA_asmbl_62422: 154529-154829 , PASA_asmbl_62424: 155365-155788
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_250 0.0 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_0655500 [Ricinus communis]
2 Hb_001902_060 0.0770198116 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
3 Hb_000544_060 0.0996012113 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
4 Hb_000465_480 0.1035047815 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]
5 Hb_001141_370 0.1061907517 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
6 Hb_001117_190 0.1093868868 transcription factor TF Family: FAR1 FAR1-related sequence 11 [Theobroma cacao]
7 Hb_001059_100 0.1153941193 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
8 Hb_000753_100 0.1156704147 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
9 Hb_007229_040 0.1160426435 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
10 Hb_000152_340 0.1163976415 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
11 Hb_026198_040 0.1175715296 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
12 Hb_007193_110 0.1187127929 - - PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]
13 Hb_031711_010 0.1203594439 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
14 Hb_000340_110 0.1225521105 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
15 Hb_002997_160 0.1227893304 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Jatropha curcas]
16 Hb_000441_070 0.1228304875 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
17 Hb_007676_100 0.1232490975 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
18 Hb_012114_050 0.1240820037 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
19 Hb_000832_320 0.1253285502 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
20 Hb_003858_090 0.126127438 - - Filamin-A-interacting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000920_250 Hb_000920_250 Hb_001902_060 Hb_001902_060 Hb_000920_250--Hb_001902_060 Hb_000544_060 Hb_000544_060 Hb_000920_250--Hb_000544_060 Hb_000465_480 Hb_000465_480 Hb_000920_250--Hb_000465_480 Hb_001141_370 Hb_001141_370 Hb_000920_250--Hb_001141_370 Hb_001117_190 Hb_001117_190 Hb_000920_250--Hb_001117_190 Hb_001059_100 Hb_001059_100 Hb_000920_250--Hb_001059_100 Hb_000152_340 Hb_000152_340 Hb_001902_060--Hb_000152_340 Hb_001902_060--Hb_000544_060 Hb_002499_070 Hb_002499_070 Hb_001902_060--Hb_002499_070 Hb_007676_100 Hb_007676_100 Hb_001902_060--Hb_007676_100 Hb_001902_060--Hb_001141_370 Hb_000544_060--Hb_001141_370 Hb_000661_200 Hb_000661_200 Hb_000544_060--Hb_000661_200 Hb_052764_060 Hb_052764_060 Hb_000544_060--Hb_052764_060 Hb_006663_040 Hb_006663_040 Hb_000544_060--Hb_006663_040 Hb_000832_320 Hb_000832_320 Hb_000544_060--Hb_000832_320 Hb_000465_480--Hb_001902_060 Hb_000465_480--Hb_001059_100 Hb_010578_060 Hb_010578_060 Hb_000465_480--Hb_010578_060 Hb_000465_170 Hb_000465_170 Hb_000465_480--Hb_000465_170 Hb_000465_480--Hb_007676_100 Hb_000236_220 Hb_000236_220 Hb_001141_370--Hb_000236_220 Hb_001243_060 Hb_001243_060 Hb_001141_370--Hb_001243_060 Hb_009771_100 Hb_009771_100 Hb_001141_370--Hb_009771_100 Hb_000340_110 Hb_000340_110 Hb_001141_370--Hb_000340_110 Hb_003858_090 Hb_003858_090 Hb_001141_370--Hb_003858_090 Hb_003540_160 Hb_003540_160 Hb_001117_190--Hb_003540_160 Hb_007229_040 Hb_007229_040 Hb_001117_190--Hb_007229_040 Hb_000317_150 Hb_000317_150 Hb_001117_190--Hb_000317_150 Hb_000753_100 Hb_000753_100 Hb_001117_190--Hb_000753_100 Hb_005539_190 Hb_005539_190 Hb_001117_190--Hb_005539_190 Hb_005188_060 Hb_005188_060 Hb_001117_190--Hb_005188_060 Hb_000025_360 Hb_000025_360 Hb_001059_100--Hb_000025_360 Hb_000865_080 Hb_000865_080 Hb_001059_100--Hb_000865_080 Hb_001059_100--Hb_007676_100 Hb_000140_070 Hb_000140_070 Hb_001059_100--Hb_000140_070 Hb_000959_040 Hb_000959_040 Hb_001059_100--Hb_000959_040 Hb_000291_190 Hb_000291_190 Hb_001059_100--Hb_000291_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.43367 8.21581 3.47274 0.885909 6.8665 5.44413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.89414 1.98289 2.53908 2.17665 1.81203

CAGE analysis