Hb_000336_140

Information

Type -
Description -
Location Contig336: 210716-214386
Sequence    

Annotation

kegg
ID rcu:RCOM_1677780
description hypothetical protein
nr
ID XP_002509538.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LK32
description Uncharacterized protein At3g27210 OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1
trembl
ID B9RBK4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1677780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35159: 210734-214488 , PASA_asmbl_35160: 209929-210933 , PASA_asmbl_35161: 212831-213263
cDNA
(Sanger)
(ID:Location)		 050_B02.ab1: 214228-214416 , 051_E18.ab1: 213989-214488

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000336_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000077_070 0.0767303957 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
3 Hb_000140_070 0.0925512791 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
4 Hb_045046_010 0.0933237249 transcription factor TF Family: TUB hypothetical protein POPTR_0011s11070g [Populus trichocarpa]
5 Hb_003126_030 0.0946555608 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003878_140 0.0958145661 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
7 Hb_002813_010 0.0960407963 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
8 Hb_001053_030 0.1014345706 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
9 Hb_005946_170 0.101582075 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
10 Hb_000224_060 0.1021472896 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
11 Hb_000291_190 0.1026433464 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
12 Hb_001220_030 0.102793 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
13 Hb_000865_080 0.1038045667 - - arsenite-resistance protein, putative [Ricinus communis]
14 Hb_000025_360 0.1048637567 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
15 Hb_006573_200 0.1051294442 - - PREDICTED: pentatricopeptide repeat-containing protein At5g52850, chloroplastic [Jatropha curcas]
16 Hb_042038_020 0.1092208833 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
17 Hb_023827_040 0.1096713742 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
18 Hb_001616_050 0.1107324015 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
19 Hb_000997_090 0.1109789625 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
20 Hb_002977_010 0.1110904497 - - PREDICTED: F-box protein GID2 [Jatropha curcas]

Gene co-expression network

sample Hb_000336_140 Hb_000336_140 Hb_000077_070 Hb_000077_070 Hb_000336_140--Hb_000077_070 Hb_000140_070 Hb_000140_070 Hb_000336_140--Hb_000140_070 Hb_045046_010 Hb_045046_010 Hb_000336_140--Hb_045046_010 Hb_003126_030 Hb_003126_030 Hb_000336_140--Hb_003126_030 Hb_003878_140 Hb_003878_140 Hb_000336_140--Hb_003878_140 Hb_002813_010 Hb_002813_010 Hb_000336_140--Hb_002813_010 Hb_000077_230 Hb_000077_230 Hb_000077_070--Hb_000077_230 Hb_000025_360 Hb_000025_360 Hb_000077_070--Hb_000025_360 Hb_000032_320 Hb_000032_320 Hb_000077_070--Hb_000032_320 Hb_001247_070 Hb_001247_070 Hb_000077_070--Hb_001247_070 Hb_001728_100 Hb_001728_100 Hb_000077_070--Hb_001728_100 Hb_001059_100 Hb_001059_100 Hb_000140_070--Hb_001059_100 Hb_003373_040 Hb_003373_040 Hb_000140_070--Hb_003373_040 Hb_076693_020 Hb_076693_020 Hb_000140_070--Hb_076693_020 Hb_001220_030 Hb_001220_030 Hb_000140_070--Hb_001220_030 Hb_093084_070 Hb_093084_070 Hb_000140_070--Hb_093084_070 Hb_006847_040 Hb_006847_040 Hb_000140_070--Hb_006847_040 Hb_063100_010 Hb_063100_010 Hb_045046_010--Hb_063100_010 Hb_002977_010 Hb_002977_010 Hb_045046_010--Hb_002977_010 Hb_045046_010--Hb_003878_140 Hb_045046_010--Hb_003126_030 Hb_002849_080 Hb_002849_080 Hb_045046_010--Hb_002849_080 Hb_102129_070 Hb_102129_070 Hb_003126_030--Hb_102129_070 Hb_000140_080 Hb_000140_080 Hb_003126_030--Hb_000140_080 Hb_008554_120 Hb_008554_120 Hb_003126_030--Hb_008554_120 Hb_000152_340 Hb_000152_340 Hb_003126_030--Hb_000152_340 Hb_000406_240 Hb_000406_240 Hb_003126_030--Hb_000406_240 Hb_000169_130 Hb_000169_130 Hb_003126_030--Hb_000169_130 Hb_000224_060 Hb_000224_060 Hb_003878_140--Hb_000224_060 Hb_003878_140--Hb_002977_010 Hb_001616_050 Hb_001616_050 Hb_003878_140--Hb_001616_050 Hb_001584_170 Hb_001584_170 Hb_003878_140--Hb_001584_170 Hb_000865_080 Hb_000865_080 Hb_003878_140--Hb_000865_080 Hb_017075_030 Hb_017075_030 Hb_003878_140--Hb_017075_030 Hb_005946_170 Hb_005946_170 Hb_002813_010--Hb_005946_170 Hb_001080_270 Hb_001080_270 Hb_002813_010--Hb_001080_270 Hb_000421_120 Hb_000421_120 Hb_002813_010--Hb_000421_120 Hb_002813_010--Hb_000865_080 Hb_002524_040 Hb_002524_040 Hb_002813_010--Hb_002524_040 Hb_004162_280 Hb_004162_280 Hb_002813_010--Hb_004162_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
129.536 162.474 27.1022 25.5128 119.798 94.4909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.4774 52.7135 84.9627 48.5791 21.5737

CAGE analysis