Hb_003517_060

Information

Type -
Description -
Location Contig3517: 80581-81990
Sequence    

Annotation

kegg
ID cic:CICLE_v10008214mg
description hypothetical protein
nr
ID KDO62243.1
description hypothetical protein CISIN_1g044999mg, partial [Citrus sinensis]
swissprot
ID O22193
description U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3
trembl
ID A0A067F4J1
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g044999mg PE=4 SV=1
Gene Ontology
ID GO:0016874
description armadillo repeat-containing protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36537: 80370-82290
cDNA
(Sanger)
(ID:Location)		 051_C09.ab1: 81551-82180

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003517_060 0.0 - - hypothetical protein CISIN_1g044999mg, partial [Citrus sinensis]
2 Hb_004449_050 0.1196500718 - - PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Jatropha curcas]
3 Hb_000465_480 0.1292945344 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]
4 Hb_000336_140 0.1297278124 - - conserved hypothetical protein [Ricinus communis]
5 Hb_018133_030 0.1300049073 - - Heme-binding protein, putative [Ricinus communis]
6 Hb_001053_030 0.1341311766 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
7 Hb_000140_070 0.1453817918 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
8 Hb_030827_060 0.1470313109 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2b [Jatropha curcas]
9 Hb_026198_040 0.1470450616 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
10 Hb_164010_070 0.1483361047 - - Paramyosin, putative [Ricinus communis]
11 Hb_000009_580 0.148847343 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
12 Hb_000340_110 0.149004093 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
13 Hb_001902_060 0.1501185767 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
14 Hb_002849_080 0.1522278951 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
15 Hb_003349_010 0.1528961955 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
16 Hb_005038_020 0.1590608252 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_007403_050 0.159289108 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
18 Hb_001059_100 0.1594144709 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
19 Hb_042038_020 0.1613994847 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
20 Hb_006316_070 0.1622068396 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003517_060 Hb_003517_060 Hb_004449_050 Hb_004449_050 Hb_003517_060--Hb_004449_050 Hb_000465_480 Hb_000465_480 Hb_003517_060--Hb_000465_480 Hb_000336_140 Hb_000336_140 Hb_003517_060--Hb_000336_140 Hb_018133_030 Hb_018133_030 Hb_003517_060--Hb_018133_030 Hb_001053_030 Hb_001053_030 Hb_003517_060--Hb_001053_030 Hb_000140_070 Hb_000140_070 Hb_003517_060--Hb_000140_070 Hb_004449_050--Hb_018133_030 Hb_030827_060 Hb_030827_060 Hb_004449_050--Hb_030827_060 Hb_003349_010 Hb_003349_010 Hb_004449_050--Hb_003349_010 Hb_000340_110 Hb_000340_110 Hb_004449_050--Hb_000340_110 Hb_026198_040 Hb_026198_040 Hb_004449_050--Hb_026198_040 Hb_000920_250 Hb_000920_250 Hb_000465_480--Hb_000920_250 Hb_001902_060 Hb_001902_060 Hb_000465_480--Hb_001902_060 Hb_001059_100 Hb_001059_100 Hb_000465_480--Hb_001059_100 Hb_010578_060 Hb_010578_060 Hb_000465_480--Hb_010578_060 Hb_000465_170 Hb_000465_170 Hb_000465_480--Hb_000465_170 Hb_007676_100 Hb_007676_100 Hb_000465_480--Hb_007676_100 Hb_000077_070 Hb_000077_070 Hb_000336_140--Hb_000077_070 Hb_000336_140--Hb_000140_070 Hb_045046_010 Hb_045046_010 Hb_000336_140--Hb_045046_010 Hb_003126_030 Hb_003126_030 Hb_000336_140--Hb_003126_030 Hb_003878_140 Hb_003878_140 Hb_000336_140--Hb_003878_140 Hb_002813_010 Hb_002813_010 Hb_000336_140--Hb_002813_010 Hb_009028_030 Hb_009028_030 Hb_018133_030--Hb_009028_030 Hb_057451_010 Hb_057451_010 Hb_018133_030--Hb_057451_010 Hb_000808_070 Hb_000808_070 Hb_018133_030--Hb_000808_070 Hb_018133_030--Hb_030827_060 Hb_164010_070 Hb_164010_070 Hb_018133_030--Hb_164010_070 Hb_124677_060 Hb_124677_060 Hb_001053_030--Hb_124677_060 Hb_001053_030--Hb_000340_110 Hb_002745_010 Hb_002745_010 Hb_001053_030--Hb_002745_010 Hb_001053_030--Hb_000336_140 Hb_000243_380 Hb_000243_380 Hb_001053_030--Hb_000243_380 Hb_144824_010 Hb_144824_010 Hb_001053_030--Hb_144824_010 Hb_000140_070--Hb_001059_100 Hb_003373_040 Hb_003373_040 Hb_000140_070--Hb_003373_040 Hb_076693_020 Hb_076693_020 Hb_000140_070--Hb_076693_020 Hb_001220_030 Hb_001220_030 Hb_000140_070--Hb_001220_030 Hb_093084_070 Hb_093084_070 Hb_000140_070--Hb_093084_070 Hb_006847_040 Hb_006847_040 Hb_000140_070--Hb_006847_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.2515 133.796 16.0654 22.3473 101.996 66.3334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9936 26.6811 56.1875 16.7325 7.76381

CAGE analysis