Hb_002999_060

Information

Type -
Description -
Location Contig2999: 59962-60633
Sequence    

Annotation

kegg
ID pop:POPTR_0010s17540g
description POPTRDRAFT_833711; zinc finger family protein
nr
ID XP_012067657.1
description PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
swissprot
ID Q8LPN7
description E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1
trembl
ID A0A067LAW3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15616 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002999_060 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
2 Hb_013394_060 0.0843678982 - - PREDICTED: IST1-like protein isoform X1 [Jatropha curcas]
3 Hb_002965_030 0.1209821663 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
4 Hb_030827_060 0.1215076549 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2b [Jatropha curcas]
5 Hb_000720_070 0.1230750073 transcription factor TF Family: HSF hypothetical protein JCGZ_20639 [Jatropha curcas]
6 Hb_000483_380 0.1374881816 - - PREDICTED: bax inhibitor 1-like [Jatropha curcas]
7 Hb_000422_110 0.1511467905 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
8 Hb_002918_310 0.1582926042 - - PREDICTED: dnaJ protein homolog 1-like [Jatropha curcas]
9 Hb_006745_010 0.1585802726 - - PREDICTED: uncharacterized protein LOC105640095 [Jatropha curcas]
10 Hb_001189_130 0.1629108155 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
11 Hb_003710_040 0.1671380335 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
12 Hb_033312_150 0.1681606744 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
13 Hb_000260_370 0.1683678746 - - protein phosphatase-1, putative [Ricinus communis]
14 Hb_001221_160 0.1708953999 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
15 Hb_003858_090 0.1719245516 - - Filamin-A-interacting protein, putative [Ricinus communis]
16 Hb_002431_020 0.174341913 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
17 Hb_008864_040 0.174746543 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
18 Hb_001902_060 0.1772834105 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
19 Hb_013749_020 0.1776208238 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
20 Hb_004296_010 0.1780046329 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002999_060 Hb_002999_060 Hb_013394_060 Hb_013394_060 Hb_002999_060--Hb_013394_060 Hb_002965_030 Hb_002965_030 Hb_002999_060--Hb_002965_030 Hb_030827_060 Hb_030827_060 Hb_002999_060--Hb_030827_060 Hb_000720_070 Hb_000720_070 Hb_002999_060--Hb_000720_070 Hb_000483_380 Hb_000483_380 Hb_002999_060--Hb_000483_380 Hb_000422_110 Hb_000422_110 Hb_002999_060--Hb_000422_110 Hb_013394_060--Hb_000483_380 Hb_013394_060--Hb_002965_030 Hb_013394_060--Hb_000720_070 Hb_013394_060--Hb_030827_060 Hb_000538_010 Hb_000538_010 Hb_013394_060--Hb_000538_010 Hb_000735_100 Hb_000735_100 Hb_002965_030--Hb_000735_100 Hb_002965_030--Hb_000720_070 Hb_002896_060 Hb_002896_060 Hb_002965_030--Hb_002896_060 Hb_001946_240 Hb_001946_240 Hb_002965_030--Hb_001946_240 Hb_030827_060--Hb_000422_110 Hb_026198_040 Hb_026198_040 Hb_030827_060--Hb_026198_040 Hb_104265_030 Hb_104265_030 Hb_030827_060--Hb_104265_030 Hb_018133_030 Hb_018133_030 Hb_030827_060--Hb_018133_030 Hb_004449_050 Hb_004449_050 Hb_030827_060--Hb_004449_050 Hb_001534_070 Hb_001534_070 Hb_000720_070--Hb_001534_070 Hb_005725_020 Hb_005725_020 Hb_000720_070--Hb_005725_020 Hb_027420_050 Hb_027420_050 Hb_000720_070--Hb_027420_050 Hb_003040_020 Hb_003040_020 Hb_000483_380--Hb_003040_020 Hb_158604_010 Hb_158604_010 Hb_000483_380--Hb_158604_010 Hb_033312_150 Hb_033312_150 Hb_000483_380--Hb_033312_150 Hb_013749_020 Hb_013749_020 Hb_000483_380--Hb_013749_020 Hb_000116_060 Hb_000116_060 Hb_000483_380--Hb_000116_060 Hb_000544_060 Hb_000544_060 Hb_000483_380--Hb_000544_060 Hb_000422_110--Hb_013749_020 Hb_007813_030 Hb_007813_030 Hb_000422_110--Hb_007813_030 Hb_002073_280 Hb_002073_280 Hb_000422_110--Hb_002073_280 Hb_000574_510 Hb_000574_510 Hb_000422_110--Hb_000574_510 Hb_000422_110--Hb_000544_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.3522 147.416 30.3241 74.4904 227.448 57.4731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.7851 26.9389 24.7561 34.3435 28.2233

CAGE analysis