Hb_000538_010

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig538: 27898-31531
Sequence    

Annotation

kegg
ID rcu:RCOM_1604380
description DNA binding protein, putative
nr
ID XP_012074729.1
description PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
swissprot
ID F4KGY6
description Protein REVEILLE 1 OS=Arabidopsis thaliana GN=RVE1 PE=2 SV=1
trembl
ID A0A067KI22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10504 PE=4 SV=1
Gene Ontology
ID GO:0003677
description rve1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47629: 27929-31529 , PASA_asmbl_47630: 27929-30529 , PASA_asmbl_47631: 27929-30381
cDNA
(Sanger)
(ID:Location)		 044_M16.ab1: 27929-29328

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_010 0.0 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
2 Hb_001307_010 0.1206125449 - - PREDICTED: uncharacterized protein LOC103939917 [Pyrus x bretschneideri]
3 Hb_031711_010 0.1284918481 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
4 Hb_000390_220 0.1336362977 - - PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera]
5 Hb_013394_060 0.13432661 - - PREDICTED: IST1-like protein isoform X1 [Jatropha curcas]
6 Hb_000920_250 0.1388728281 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_0655500 [Ricinus communis]
7 Hb_001189_130 0.1430009867 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
8 Hb_001414_140 0.1437497686 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Populus euphratica]
9 Hb_009771_100 0.1450377382 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
10 Hb_030827_060 0.1476197866 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2b [Jatropha curcas]
11 Hb_000340_110 0.1489155786 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
12 Hb_026198_040 0.1494399158 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
13 Hb_000422_110 0.1501531971 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
14 Hb_167381_020 0.150857058 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
15 Hb_001902_060 0.1512568906 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
16 Hb_000152_510 0.1540536188 - - kinase, putative [Ricinus communis]
17 Hb_012114_050 0.1555598248 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
18 Hb_013749_020 0.1562836843 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
19 Hb_178127_010 0.1588205779 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
20 Hb_001141_370 0.15899191 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]

Gene co-expression network

sample Hb_000538_010 Hb_000538_010 Hb_001307_010 Hb_001307_010 Hb_000538_010--Hb_001307_010 Hb_031711_010 Hb_031711_010 Hb_000538_010--Hb_031711_010 Hb_000390_220 Hb_000390_220 Hb_000538_010--Hb_000390_220 Hb_013394_060 Hb_013394_060 Hb_000538_010--Hb_013394_060 Hb_000920_250 Hb_000920_250 Hb_000538_010--Hb_000920_250 Hb_001189_130 Hb_001189_130 Hb_000538_010--Hb_001189_130 Hb_167381_020 Hb_167381_020 Hb_001307_010--Hb_167381_020 Hb_000422_110 Hb_000422_110 Hb_001307_010--Hb_000422_110 Hb_001307_010--Hb_031711_010 Hb_009771_100 Hb_009771_100 Hb_001307_010--Hb_009771_100 Hb_011909_060 Hb_011909_060 Hb_001307_010--Hb_011909_060 Hb_001454_220 Hb_001454_220 Hb_001307_010--Hb_001454_220 Hb_031711_010--Hb_009771_100 Hb_031711_010--Hb_011909_060 Hb_000230_430 Hb_000230_430 Hb_031711_010--Hb_000230_430 Hb_000457_050 Hb_000457_050 Hb_031711_010--Hb_000457_050 Hb_001243_060 Hb_001243_060 Hb_031711_010--Hb_001243_060 Hb_007193_110 Hb_007193_110 Hb_031711_010--Hb_007193_110 Hb_001662_030 Hb_001662_030 Hb_000390_220--Hb_001662_030 Hb_075449_020 Hb_075449_020 Hb_000390_220--Hb_075449_020 Hb_000390_220--Hb_001189_130 Hb_025306_010 Hb_025306_010 Hb_000390_220--Hb_025306_010 Hb_000390_220--Hb_001307_010 Hb_000953_030 Hb_000953_030 Hb_000390_220--Hb_000953_030 Hb_002999_060 Hb_002999_060 Hb_013394_060--Hb_002999_060 Hb_000483_380 Hb_000483_380 Hb_013394_060--Hb_000483_380 Hb_002965_030 Hb_002965_030 Hb_013394_060--Hb_002965_030 Hb_000720_070 Hb_000720_070 Hb_013394_060--Hb_000720_070 Hb_030827_060 Hb_030827_060 Hb_013394_060--Hb_030827_060 Hb_001902_060 Hb_001902_060 Hb_000920_250--Hb_001902_060 Hb_000544_060 Hb_000544_060 Hb_000920_250--Hb_000544_060 Hb_000465_480 Hb_000465_480 Hb_000920_250--Hb_000465_480 Hb_001141_370 Hb_001141_370 Hb_000920_250--Hb_001141_370 Hb_001117_190 Hb_001117_190 Hb_000920_250--Hb_001117_190 Hb_001059_100 Hb_001059_100 Hb_000920_250--Hb_001059_100 Hb_000449_050 Hb_000449_050 Hb_001189_130--Hb_000449_050 Hb_001189_130--Hb_001141_370 Hb_000340_110 Hb_000340_110 Hb_001189_130--Hb_000340_110 Hb_000152_340 Hb_000152_340 Hb_001189_130--Hb_000152_340 Hb_000540_120 Hb_000540_120 Hb_001189_130--Hb_000540_120 Hb_001189_130--Hb_001662_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
123.254 426.864 170.194 74.1714 354.601 144.952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.0356 92.2608 78.7108 60.8447 28.1374

CAGE analysis