Hb_025306_010

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig25306: 15693-27194
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15510g
description syringolide-induced protein 1-3-1B
nr
ID XP_006368993.1
description syringolide-induced protein 1-3-1B [Populus trichocarpa]
swissprot
ID Q2V9B0
description Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1
trembl
ID B9MUR9
description Syringolide-induced protein 1-3-1B OS=Populus trichocarpa GN=POPTR_0001s15510g PE=4 SV=1
Gene Ontology
ID GO:0003677
description syringolide-induced protein 1-3-1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26469: 15643-22287 , PASA_asmbl_26470: 16834-17294
cDNA
(Sanger)
(ID:Location)		 045_F22.ab1: 15643-21584

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025306_010 0.0 transcription factor TF Family: MYB-related syringolide-induced protein 1-3-1B [Populus trichocarpa]
2 Hb_075449_020 0.1223450824 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
3 Hb_000390_220 0.1226246664 - - PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera]
4 Hb_001662_030 0.1327917369 - - PREDICTED: F-box protein SKIP23-like [Populus euphratica]
5 Hb_003906_190 0.1394106224 - - hypothetical protein EUGRSUZ_K00213 [Eucalyptus grandis]
6 Hb_006346_040 0.140837121 - - hypothetical protein JCGZ_20335 [Jatropha curcas]
7 Hb_000540_120 0.141785947 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
8 Hb_046117_010 0.1477385177 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
9 Hb_001999_250 0.1484760329 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
10 Hb_000987_130 0.1490610195 - - -
11 Hb_000283_130 0.1516644282 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
12 Hb_007403_050 0.152345558 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
13 Hb_011465_030 0.1530533596 - - PREDICTED: B2 protein [Jatropha curcas]
14 Hb_011909_060 0.1590981013 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
15 Hb_005565_010 0.1597880875 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
16 Hb_080147_080 0.1605807873 - - peroxiredoxin, putative [Ricinus communis]
17 Hb_002928_160 0.1616967426 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
18 Hb_012226_010 0.1650301775 - - PREDICTED: protein DGCR14 [Jatropha curcas]
19 Hb_001247_230 0.1679700185 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_001189_130 0.1690054119 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]

Gene co-expression network

sample Hb_025306_010 Hb_025306_010 Hb_075449_020 Hb_075449_020 Hb_025306_010--Hb_075449_020 Hb_000390_220 Hb_000390_220 Hb_025306_010--Hb_000390_220 Hb_001662_030 Hb_001662_030 Hb_025306_010--Hb_001662_030 Hb_003906_190 Hb_003906_190 Hb_025306_010--Hb_003906_190 Hb_006346_040 Hb_006346_040 Hb_025306_010--Hb_006346_040 Hb_000540_120 Hb_000540_120 Hb_025306_010--Hb_000540_120 Hb_075449_020--Hb_001662_030 Hb_075449_020--Hb_000390_220 Hb_075449_020--Hb_000540_120 Hb_011465_030 Hb_011465_030 Hb_075449_020--Hb_011465_030 Hb_001999_250 Hb_001999_250 Hb_075449_020--Hb_001999_250 Hb_000390_220--Hb_001662_030 Hb_001189_130 Hb_001189_130 Hb_000390_220--Hb_001189_130 Hb_001307_010 Hb_001307_010 Hb_000390_220--Hb_001307_010 Hb_000953_030 Hb_000953_030 Hb_000390_220--Hb_000953_030 Hb_000034_160 Hb_000034_160 Hb_001662_030--Hb_000034_160 Hb_000258_120 Hb_000258_120 Hb_001662_030--Hb_000258_120 Hb_001662_030--Hb_001189_130 Hb_000283_130 Hb_000283_130 Hb_001662_030--Hb_000283_130 Hb_002626_040 Hb_002626_040 Hb_003906_190--Hb_002626_040 Hb_003906_190--Hb_011465_030 Hb_000265_250 Hb_000265_250 Hb_003906_190--Hb_000265_250 Hb_002477_150 Hb_002477_150 Hb_003906_190--Hb_002477_150 Hb_001247_230 Hb_001247_230 Hb_003906_190--Hb_001247_230 Hb_006346_040--Hb_000283_130 Hb_001171_070 Hb_001171_070 Hb_006346_040--Hb_001171_070 Hb_005883_010 Hb_005883_010 Hb_006346_040--Hb_005883_010 Hb_007403_050 Hb_007403_050 Hb_006346_040--Hb_007403_050 Hb_000084_030 Hb_000084_030 Hb_006346_040--Hb_000084_030 Hb_000457_050 Hb_000457_050 Hb_006346_040--Hb_000457_050 Hb_000540_120--Hb_011465_030 Hb_000540_120--Hb_007403_050 Hb_000540_120--Hb_001189_130 Hb_000140_070 Hb_000140_070 Hb_000540_120--Hb_000140_070 Hb_010831_020 Hb_010831_020 Hb_000540_120--Hb_010831_020 Hb_003125_030 Hb_003125_030 Hb_000540_120--Hb_003125_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
293.155 531.258 133.329 68.3284 207.297 212.382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
155.111 81.8206 70.9799 28.239 15.0466

CAGE analysis