Hb_075449_020

Information

Type -
Description -
Location Contig75449: 7063-7350
Sequence    

Annotation

kegg
ID pop:POPTR_0001s37560g
description POPTRDRAFT_707661; hypothetical protein
nr
ID XP_012071020.1
description PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L466
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01037 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56976: 6899-7540
cDNA
(Sanger)
(ID:Location)		 030_A08.ab1: 6900-7540 , 040_H08.ab1: 6900-7540

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075449_020 0.0 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
2 Hb_001662_030 0.1038250094 - - PREDICTED: F-box protein SKIP23-like [Populus euphratica]
3 Hb_000390_220 0.1159442878 - - PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera]
4 Hb_025306_010 0.1223450824 transcription factor TF Family: MYB-related syringolide-induced protein 1-3-1B [Populus trichocarpa]
5 Hb_000540_120 0.1316911516 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
6 Hb_011465_030 0.132993757 - - PREDICTED: B2 protein [Jatropha curcas]
7 Hb_001999_250 0.1349076607 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
8 Hb_046117_010 0.1366552345 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
9 Hb_012226_010 0.1402573544 - - PREDICTED: protein DGCR14 [Jatropha curcas]
10 Hb_001189_130 0.1450121418 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
11 Hb_001504_190 0.1456479483 - - double-stranded RNA binding protein, putative [Ricinus communis]
12 Hb_003349_010 0.1465478523 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
13 Hb_001638_040 0.147067477 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
14 Hb_002928_160 0.1474368279 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
15 Hb_080147_080 0.1490750504 - - peroxiredoxin, putative [Ricinus communis]
16 Hb_002849_080 0.149590665 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
17 Hb_010831_020 0.1535733609 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
18 Hb_004017_040 0.1552568275 - - kinetochore protein nuf2, putative [Ricinus communis]
19 Hb_002316_050 0.1565075571 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000283_130 0.156517793 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]

Gene co-expression network

sample Hb_075449_020 Hb_075449_020 Hb_001662_030 Hb_001662_030 Hb_075449_020--Hb_001662_030 Hb_000390_220 Hb_000390_220 Hb_075449_020--Hb_000390_220 Hb_025306_010 Hb_025306_010 Hb_075449_020--Hb_025306_010 Hb_000540_120 Hb_000540_120 Hb_075449_020--Hb_000540_120 Hb_011465_030 Hb_011465_030 Hb_075449_020--Hb_011465_030 Hb_001999_250 Hb_001999_250 Hb_075449_020--Hb_001999_250 Hb_000034_160 Hb_000034_160 Hb_001662_030--Hb_000034_160 Hb_000258_120 Hb_000258_120 Hb_001662_030--Hb_000258_120 Hb_001189_130 Hb_001189_130 Hb_001662_030--Hb_001189_130 Hb_001662_030--Hb_000390_220 Hb_000283_130 Hb_000283_130 Hb_001662_030--Hb_000283_130 Hb_000390_220--Hb_001189_130 Hb_000390_220--Hb_025306_010 Hb_001307_010 Hb_001307_010 Hb_000390_220--Hb_001307_010 Hb_000953_030 Hb_000953_030 Hb_000390_220--Hb_000953_030 Hb_025306_010--Hb_001662_030 Hb_003906_190 Hb_003906_190 Hb_025306_010--Hb_003906_190 Hb_006346_040 Hb_006346_040 Hb_025306_010--Hb_006346_040 Hb_025306_010--Hb_000540_120 Hb_000540_120--Hb_011465_030 Hb_007403_050 Hb_007403_050 Hb_000540_120--Hb_007403_050 Hb_000540_120--Hb_001189_130 Hb_000140_070 Hb_000140_070 Hb_000540_120--Hb_000140_070 Hb_010831_020 Hb_010831_020 Hb_000540_120--Hb_010831_020 Hb_003125_030 Hb_003125_030 Hb_000540_120--Hb_003125_030 Hb_002477_150 Hb_002477_150 Hb_011465_030--Hb_002477_150 Hb_000265_250 Hb_000265_250 Hb_011465_030--Hb_000265_250 Hb_011465_030--Hb_007403_050 Hb_001946_300 Hb_001946_300 Hb_011465_030--Hb_001946_300 Hb_002849_080 Hb_002849_080 Hb_011465_030--Hb_002849_080 Hb_001247_230 Hb_001247_230 Hb_001999_250--Hb_001247_230 Hb_003349_010 Hb_003349_010 Hb_001999_250--Hb_003349_010 Hb_001999_250--Hb_000265_250 Hb_001504_190 Hb_001504_190 Hb_001999_250--Hb_001504_190 Hb_001999_250--Hb_002849_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
253.358 361.491 58.6412 80.4785 166.39 123.354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.2877 56.7375 26.455 42.9194 19.2679

CAGE analysis